View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14588_high_6 (Length: 264)
Name: NF14588_high_6
Description: NF14588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14588_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 56 - 247
Target Start/End: Original strand, 9245306 - 9245515
Alignment:
| Q |
56 |
tacttgtacgtaatatacttgaagtgtagcaaagcagtaaatgatgatcctgagtatgtaaatacagctccctgcatcaactccgactctaaaacctatc |
155 |
Q |
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|||||| || ||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |||| ||||| |
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| T |
9245306 |
tacttgcacataatatacttgaaatgtagcaaagcagtgaatgatgatcctgagtatgtggatacagctccctgtatcaactccgactccaaaagctatc |
9245405 |
T |
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| Q |
156 |
tttatgcttttgc------------------tggaaattacttctccgtcgggagatttaaagattattgcaaagtgaagcttgttgctatgtcatcttc |
237 |
Q |
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||||||||||||| || | |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |
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| T |
9245406 |
tttatgcttttgcgtcagacttctcctcgagtgaccactacttctccgtcgggagattaaaagactattgccaagtgaagcttgttgctatgtcatcttc |
9245505 |
T |
|
| Q |
238 |
agattttcct |
247 |
Q |
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|||||||||| |
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| T |
9245506 |
agattttcct |
9245515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 9335414 - 9335307
Alignment:
| Q |
61 |
gtacgtaatatacttgaagtgtagcaaagcagtaaatgatgatcctgagtatgtaaatacagctccctgcatcaactccgactctaaaacctatctttat |
160 |
Q |
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|||| ||||||||||||||||||||||| ||| ||||||||| |||||||||| |||||||||||||||||| ||||||||| |||| |||||||||| |
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| T |
9335414 |
gtacataatatacttgaagtgtagcaaacaagtgaatgatgatactgagtatgtggatacagctccctgcatcagctccgactccaaaagctatctttat |
9335315 |
T |
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| Q |
161 |
gcttttgc |
168 |
Q |
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|||||||| |
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| T |
9335314 |
gcttttgc |
9335307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 9359135 - 9359033
Alignment:
| Q |
66 |
taatatacttgaagtgtagcaaagcagtaaatgatgatcctgagtatgtaaatacagctccctgcatcaactccgactctaaaacctatctttatgcttt |
165 |
Q |
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| T |
9359135 |
taatatacttgaattgtagcaaacaagtgaatgatgatcctgagtatgtggatacagctccctgtatcaactccgactccgaaagctatctttatgcttt |
9359036 |
T |
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| Q |
166 |
tgc |
168 |
Q |
| |
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||| |
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|
| T |
9359035 |
tgc |
9359033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 9358950 - 9358891
Alignment:
| Q |
188 |
gggagatttaaagattattgcaaagtgaagcttgttgctatgtcatcttcagattttcct |
247 |
Q |
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| T |
9358950 |
gggagattaaaagattattgccaagtgaagcttgttgctatgtcatcttcagattttcct |
9358891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 9335230 - 9335182
Alignment:
| Q |
188 |
gggagatttaaagattattgcaaagtgaagcttgttgctatgtcatctt |
236 |
Q |
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| T |
9335230 |
gggagattaaaagattattgccaagtgaagcttgttgctatgtcatctt |
9335182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 61 - 245
Target Start/End: Original strand, 15913027 - 15913211
Alignment:
| Q |
61 |
gtacgtaatatacttgaagtgtagcaaagcagtaaatgatgatcctgagtatgtaaatacagctccctgcatcaactccgactctaaaacctatctttat |
160 |
Q |
| |
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|||| ||||||||||||||||||||||| |||| ||||||||||||||||| || |||| ||||||||||||| ||| ||||| |||| | || |||| |
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| T |
15913027 |
gtacataatatacttgaagtgtagcaaatcagtgaatgatgatcctgagtacgtggataccgctccctgcatcagctcggactccaaaagccatgtttac |
15913126 |
T |
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| Q |
161 |
gcttttgctggaaattacttctccgtcgggagatttaaagattattgcaaagtgaagcttgttgctatgtcatcttcagattttc |
245 |
Q |
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|||| ||| || ||||| | || |||| ||| ||||||||||||||||||| |||||| ||||||||||| |||||||||| |
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| T |
15913127 |
gcttatgccgggggatacttgacagttgggaaattaaaagattattgcaaagtgatgcttgtagctatgtcatcctcagattttc |
15913211 |
T |
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