View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14588_high_8 (Length: 258)
Name: NF14588_high_8
Description: NF14588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14588_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 24748747 - 24748975
Alignment:
| Q |
18 |
attacatcaatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaagaatcaaaacccactgttcccatctcttctcacacggttccaatt |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24748747 |
attacatctatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaagaatcaaaacccactgttctgatctcttctcacacggttccaatt |
24748846 |
T |
|
| Q |
118 |
tctttgttccaatccctctcgttttttcatcgttcttctcacactgttccgatttctacaccctcattttttcagttttgatttgtgcatatacaacaca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
24748847 |
tctttgttccaatccctctcgttttttcatcgttcttctcacactattccgatttttacaccctca-tttttcagttacgatttgtgcatatacaacaca |
24748945 |
T |
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| Q |
218 |
caagtttcgatttgttccattcatctcact |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24748946 |
caagtttcgatttgttccattcatctcact |
24748975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 17370998 - 17371225
Alignment:
| Q |
18 |
attacatcaatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaagaatcaaaacccactgttcccatctcttctcacacggttccaatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
17370998 |
attacatcaatgagttgaaagcaaagattgaaaatttagaattagtgcaacaaaagaatcaaaacccactattccgatctcttctcacacggttccaatt |
17371097 |
T |
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| Q |
118 |
tctttgttccaatccctctcgttttttcatcgttcttctcacactgttccgatttctacaccctcattttttcagttttgatttgtgcatatacaacaca |
217 |
Q |
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| T |
17371098 |
tctttgttccaatccctctcg-tttttcatcgttcttctcacattgttccgatttctacaccctca-tttttcagtttcgatttgtgcatatacaacaca |
17371195 |
T |
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| Q |
218 |
caagtttcgatttgttccattcatctcact |
247 |
Q |
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|||||||| ||||||||||||||||||||| |
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| T |
17371196 |
caagtttctatttgttccattcatctcact |
17371225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 94 - 247
Target Start/End: Complemental strand, 42363337 - 42363185
Alignment:
| Q |
94 |
atctcttctcacacggttccaatttctttgttccaatccctctcgttttttcatcgttcttctcacactgttccgatttctacaccctcattttttcagt |
193 |
Q |
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||||||||||||||||||||||||||| |||||||||| | | ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
42363337 |
atctcttctcacacggttccaatttctccgttccaatcctttttgttttctcatcgttcttctcacactgttccgatttcttcaccctcat-ttttcagt |
42363239 |
T |
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| Q |
194 |
tttgatttgtgcatatacaacacacaagtttcgatttgttccattcatctcact |
247 |
Q |
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|| |||||||| ||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
42363238 |
ttcgatttgtgtatatacaacacacaaattttgatttgttccattcatctcact |
42363185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 9213128 - 9213073
Alignment:
| Q |
18 |
attacatcaatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaag |
73 |
Q |
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|||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| |
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| T |
9213128 |
attacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaag |
9213073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 9194902 - 9194957
Alignment:
| Q |
18 |
attacatcaatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaag |
73 |
Q |
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|||||||||||||||| ||||||||||| ||| ||||| ||| || |||||||||| |
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| T |
9194902 |
attacatcaatgagttaaaagcaaagatcgaagatttaaaattagggcaacaaaag |
9194957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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