View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14588_low_1 (Length: 855)
Name: NF14588_low_1
Description: NF14588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14588_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 18 - 765
Target Start/End: Complemental strand, 56314010 - 56313272
Alignment:
| Q |
18 |
gaaattgatttggtaacatcggttgcatcagcaatgtagacaaatgattcggatttggatgattgagatgtgggttttgaacattgtaacaatattgctg |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56314010 |
gaaattgatttggtaacattggttgcatcagcaatgtagacaaatgattcggatttggatgattgagatgtgggttttgaacattgtaacaatattgctg |
56313911 |
T |
|
| Q |
118 |
ttgttgataacttacaagcctattgagatcatccatcatcattgcagcactggtagcagtattggaacagctcactgannnnnnnnnnnnnnnnnaagct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
56313910 |
ttgttgataacttacaagcctattgagatcatccatcatcattgcagcactggtagcagtattggaacagctcactg------ctgctgctgctgaagct |
56313817 |
T |
|
| Q |
218 |
gagacagggaaaatggcgcccccgccgccaccacaagcggagactaacagagagtttcccgcagcagcatattgtactaggtgcctaggttgatgctgct |
317 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
56313816 |
gagacagggaaaatgacgcccccgccgccacca---gcggagactaacagagagtttcccgcagctgaatattgtactaggtgcctaggttgatgctgct |
56313720 |
T |
|
| Q |
318 |
gctgc---atcatcatcaatccttcttcctcttctgaacggtaattagtaggaggaggagtattgctatacttggaaagcccaagagttgttgtgacatg |
414 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56313719 |
gctgctgcataatcatcaatccttcttcttcttctgaacggtaattagtaggaggaggagtattgctatacttggaaagcccaagagttgttgtgacatg |
56313620 |
T |
|
| Q |
415 |
atctgaattaccgccgctactgcttccttccattttgttaactatgtgatcatcaattgtctttggtgattgtccaacaacaaatcccattcccaatatt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56313619 |
atctgaattaccgccgctactgcttccttccattttgttaactatgtgatcatcaattgtctttggtgattgtccaacaacaaatcccattcccaata-- |
56313522 |
T |
|
| Q |
515 |
ttttcattttgctgcttattcttgtctgaatgtgaagcagtagtacctctnnnnnnnnnnnnnnnnnnnngtcgtgtaattgggagacaacgtgggaggg |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
56313521 |
-tttcattttgctgcttattcttgtctgaatgtgaagcagtagtacctcttgatgatgatgatgatgatggtcgtgtaattgggagacaacgagggaggg |
56313423 |
T |
|
| Q |
615 |
agggatgatcttctactcctgctctcttgtatacacgacatagggatatctcaccctaattcaaattgaaattcaaaattaaccaacacagttcaaatta |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
56313422 |
agggatgatcttctactcctgctctcttgtatacacgacatagggatatctcaccctaattcaaattgaaattcaaaattaatcaacacagttcaaatta |
56313323 |
T |
|
| Q |
715 |
ttattataaggatccaaaatttggcatacatttcatatttgactaattaaa |
765 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56313322 |
ttactataaggatccaaaatttggcatacatttcatatttgactaattaaa |
56313272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 787 - 855
Target Start/End: Complemental strand, 56313275 - 56313207
Alignment:
| Q |
787 |
taaaacgtacagtagtctacctgcactgcaccatcagaatgatcacgagagatgaaaggaattaattaa |
855 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56313275 |
taaaacgtacagtagtctacctgcactgcgccatcagaatgatcacgagagatgaaaggaattaattaa |
56313207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University