View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14588_low_10 (Length: 260)
Name: NF14588_low_10
Description: NF14588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14588_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 49396636 - 49396873
Alignment:
| Q |
10 |
aaaattacaatgtattatgtattatttcacccgaaatagtagttttatttgcctagttctgttagtccaagtccatttataccttaagaattgttaatcg |
109 |
Q |
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| T |
49396636 |
aaaattacaatgtattatgtattatttcacccgaaatagtagttttatttgcctagttctgttagtccaagtccatttataccttaagaattgttaatcg |
49396735 |
T |
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| Q |
110 |
gaatcaaatgagccaccaattttctctaacatttcattcttataaacatctttcataagtaaaaataaaataga-nnnnnnnnngtgtggctatcgtcca |
208 |
Q |
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| T |
49396736 |
gaatcaaatgagccaccaactttctctaacatttcattcttataaacatctttcataagtaaaaataaaatagattttttttttgtgtggctatcgtcca |
49396835 |
T |
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| Q |
209 |
tgattacaaccaataataacaaaatgtacggtaaaaac |
246 |
Q |
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| T |
49396836 |
tgattacaaccaataataacaaaatgtacggtaaaaac |
49396873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 29015477 - 29015405
Alignment:
| Q |
90 |
accttaagaattgttaatcggaatcaaatgagccaccaattttctctaacatttcattcttataaacatcttt |
162 |
Q |
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| T |
29015477 |
accttaataattgttaattagaataaaataagctgtcaattttctataacattttattcttataaatatcttt |
29015405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 37575588 - 37575652
Alignment:
| Q |
115 |
aaatgagccaccaattttctctaacatttcattcttataaacatctttcataagtaaaaataaaa |
179 |
Q |
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| T |
37575588 |
aaataagccaccaacttcttctaacatttcatttttaaaaacatctttcatatgtaaaaaaaaaa |
37575652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 47350606 - 47350650
Alignment:
| Q |
130 |
tttctctaacatttcattcttataaacatctttcataagtaaaaa |
174 |
Q |
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| T |
47350606 |
tttctttaacatttcagttttataaacatctttcatatgtaaaaa |
47350650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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