View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14588_low_15 (Length: 217)

Name: NF14588_low_15
Description: NF14588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14588_low_15
NF14588_low_15
[»] chr5 (6 HSPs)
chr5 (19-207)||(36203170-36203358)
chr5 (56-192)||(9851275-9851410)
chr5 (127-194)||(2022648-2022715)
chr5 (127-200)||(43378120-43378193)
chr5 (82-164)||(29006661-29006743)
chr5 (56-139)||(15205483-15205566)
[»] chr3 (6 HSPs)
chr3 (56-206)||(52653924-52654075)
chr3 (56-206)||(33709981-33710129)
chr3 (113-199)||(16729894-16729980)
chr3 (124-196)||(29827115-29827187)
chr3 (19-63)||(52653852-52653896)
chr3 (20-56)||(33709909-33709945)
[»] chr7 (5 HSPs)
chr7 (56-206)||(12239438-12239590)
chr7 (87-206)||(37469058-37469178)
chr7 (56-206)||(24870567-24870718)
chr7 (124-185)||(5436975-5437036)
chr7 (125-206)||(23756987-23757068)
[»] chr1 (8 HSPs)
chr1 (56-206)||(49061524-49061674)
chr1 (56-194)||(49053944-49054081)
chr1 (124-194)||(21432110-21432180)
chr1 (124-194)||(44524463-44524533)
chr1 (124-206)||(35624693-35624776)
chr1 (126-185)||(48366498-48366557)
chr1 (124-185)||(29681289-29681350)
chr1 (124-200)||(43358433-43358510)
[»] chr8 (4 HSPs)
chr8 (56-194)||(28695947-28696085)
chr8 (56-159)||(12729541-12729644)
chr8 (127-194)||(25953607-25953674)
chr8 (56-188)||(44729228-44729364)
[»] chr4 (11 HSPs)
chr4 (124-194)||(3415597-3415667)
chr4 (124-205)||(3425145-3425227)
chr4 (124-194)||(18736848-18736918)
chr4 (127-199)||(18670524-18670597)
chr4 (83-164)||(48779718-48779799)
chr4 (126-196)||(30020297-30020367)
chr4 (114-206)||(20251618-20251710)
chr4 (126-173)||(32429731-32429778)
chr4 (124-194)||(18716175-18716245)
chr4 (59-206)||(24129144-24129292)
chr4 (148-196)||(47071118-47071166)
[»] chr2 (3 HSPs)
chr2 (142-200)||(42779878-42779936)
chr2 (126-200)||(716045-716118)
chr2 (142-195)||(16272130-16272183)
[»] chr6 (4 HSPs)
chr6 (127-188)||(28611983-28612044)
chr6 (56-139)||(11932104-11932187)
chr6 (124-206)||(24075623-24075706)
chr6 (127-182)||(21937271-21937326)
[»] scaffold0007 (1 HSPs)
scaffold0007 (124-185)||(217956-218017)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 36203170 - 36203358
Alignment:
Q  19 acttgatgtgaacgtgcaagtcacgtcaaggattctattgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| ||||||||||||||||||    
T  36203170 acttgatgtgaacgtgcaagtcacgtcaaggattctattgcatccggttggcataactggtggggacgaatcgaacttaaaggttagtgtggcccacaca 36203269  T
Q  119 cgccatggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaacacaggttctg 207  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  36203270 cgccatgaaatttatgtgcacaattcattatgttcatcttcatcatcttcttgatgaagttattacagcagaccccaacataggttctg 36203358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 9851410 - 9851275
Alignment:
Q  56 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 155  Q
    |||||| ||||| || |||||||| |||| |||| |||| |||| ||||||||| |||||||||||  ||||||||||||||||||||||| ||||||||    
T  9851410 ttgcattcggttggcttaactggt-agggagaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcat 9851312  T
Q  156 cttcatcatattcttgatgaagttattgcagcagacc 192  Q
    ||||||||| || ||||| ||||||||||||||||||    
T  9851311 cttcatcatctttttgatcaagttattgcagcagacc 9851275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 2022715 - 2022648
Alignment:
Q  127 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc 194  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  2022715 aatttatgtgcacatttcatcatgttcatcttcatcatcttcttgatcaagttattgcagcagacccc 2022648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 43378193 - 43378120
Alignment:
Q  127 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaacaca 200  Q
    |||||||||||||| ||||| || |||||||||||||| ||| || | ||||||||||||||||||||||||||    
T  43378193 aatttatgtgcacacttcatcatattcatcttcatcatcttcatggtcaagttattgcagcagaccccaacaca 43378120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 29006661 - 29006743
Alignment:
Q  82 gggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcatcttcatcat 164  Q
    ||||||||||||| |||| ||||||||| | |||||||||  || |||||||||||||  ||||| || |||||||| |||||    
T  29006661 gggcgaatcgaacctaaaagttagtgtgtctcacacacgctttgaaatttatgtgcactcttcatcatattcatcttgatcat 29006743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 15205483 - 15205566
Alignment:
Q  56 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcac 139  Q
    |||||||| ||  |||||||||||| || |||||||||| | || ||||||||| |||||||||||  || |||||||| ||||    
T  15205483 ttgcatccagtcggcataactggtggggacgaatcgaacctcaaagttagtgtgtcccacacacgctttgaaatttatgggcac 15205566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 56 - 206
Target Start/End: Original strand, 52653924 - 52654075
Alignment:
Q  56 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 155  Q
    |||||||||||| ||||||||||||||||||||| |||| |||| ||||||||| |||||||||||  ||||||||||||||||| ||||| ||||||||    
T  52653924 ttgcatccggttggcataactggtgagggcgaattgaacctaaaggttagtgtgtcccacacacgctttggaatttatgtgcacacttcatcatgttcat 52654023  T
Q  156 cttcatcatattcttgatgaagttattgcagcagacccc-aacacaggttct 206  Q
     |||||||| |||||||| |||||||||| ||| ||||| ||||||||||||    
T  52654024 tttcatcatcttcttgatcaagttattgccgcaaaccccaaacacaggttct 52654075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 206
Target Start/End: Original strand, 33709981 - 33710129
Alignment:
Q  56 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 155  Q
    ||||||||||||  |||||||||||  || ||||||| | |||| ||||||||| |||||||||||  ||||||||| ||||||| ||||| |||||| |    
T  33709981 ttgcatccggttgacataactggtggaggtgaatcgatcctaaaggttagtgtgtcccacacacgctttggaattta-gtgcacacttcatcatgttctt 33710079  T
Q  156 cttcatcatattcttgatgaagttattgcagcagaccccaacacaggttct 206  Q
    | | ||||| |||||| | ||| ||||||||||||||||||||||||||||    
T  33710080 cat-atcattttcttggtcaagatattgcagcagaccccaacacaggttct 33710129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 16729894 - 16729980
Alignment:
Q  113 cacacacgccatggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaacac 199  Q
    |||||||||  || |||| ||||||||| || || ||||||||||||||| | || ||||| |||||||||||||||||||| ||||    
T  16729894 cacacacgctttgaaattaatgtgcacactttatcatgttcatcttcatcttcttattgatcaagttattgcagcagaccccgacac 16729980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 29827187 - 29827115
Alignment:
Q  124 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaa 196  Q
    |||||||||||| || | ||||| ||  ||||||||||||| |||||| |  |||||||||||||||||||||    
T  29827187 tggaatttatgttcaaacttcatcatagtcatcttcatcattttcttggtcgagttattgcagcagaccccaa 29827115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 52653852 - 52653896
Alignment:
Q  19 acttgatgtgaacgtgcaagtcacgtcaaggattctattgcatcc 63  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||    
T  52653852 acttgatgtgaatgtgcaagtcacgtcaaggattccattgtatcc 52653896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 33709909 - 33709945
Alignment:
Q  20 cttgatgtgaacgtgcaagtcacgtcaaggattctat 56  Q
    |||| |||||| |||||||||||||||||||||||||    
T  33709909 cttggtgtgaatgtgcaagtcacgtcaaggattctat 33709945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 56 - 206
Target Start/End: Complemental strand, 12239590 - 12239438
Alignment:
Q  56 ttgcatccggtttg-cataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttca 154  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||| |||| |||| |||||||||||  || |||||||||||||| ||||| || ||||    
T  12239590 ttgcatccggtttgacataactggtgggggcgaatcgaacctaaaggttaatgtgtcccacacacgctttgaaatttatgtgcacacttcatcatattca 12239491  T
Q  155 tcttcatcatattcttgatgaagttattgcagcagacc-ccaacacaggttct 206  Q
    || ||||||| ||||| || |||||||||||||| ||| |||||||| |||||    
T  12239490 tcatcatcatcttcttaatcaagttattgcagcaaacctccaacacaagttct 12239438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 37469058 - 37469178
Alignment:
Q  87 aatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcag 186  Q
    |||| ||| |||| ||||||||| ||||||||| |  || |||||||||||||| || || ||||||||||||||||| |||||||| |||||||||| |    
T  37469058 aatcaaacctaaaggttagtgtgtcccacacacactttgaaatttatgtgcacatttaatcatgttcatcttcatcatcttcttgatcaagttattgctg 37469157  T
Q  187 caga-ccccaacacaggttct 206  Q
    || | ||||||||||||||||    
T  37469158 caaacccccaacacaggttct 37469178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 56 - 206
Target Start/End: Original strand, 24870567 - 24870718
Alignment:
Q  56 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 155  Q
    |||||||||||| |||||||||||  |||||||||||||||||| |||||  || |||| ||| |   ||||||||||||| |  |||||| ||||  ||    
T  24870567 ttgcatccggttggcataactggtaggggcgaatcgaacttaaaggttagcatgtcccatacaagatgtggaatttatgtgtattattcatcatgtctat 24870666  T
Q  156 cttcatcatattcttgatgaagttattgcagcaga-ccccaacacaggttct 206  Q
    ||||||||| ||||| || |||||||||||||| | |||||||| |||||||    
T  24870667 cttcatcatcttcttcatcaagttattgcagcaaacccccaacataggttct 24870718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 5436975 - 5437036
Alignment:
Q  124 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgca 185  Q
    |||||||||| |||||| ||||| ||||||||||||||||| |||||| | |||||||||||    
T  5436975 tggaatttatttgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgca 5437036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 23757068 - 23756987
Alignment:
Q  125 ggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaacacaggttct 206  Q
    ||||||||||| |||  ||||| ||||||||||||||||| |||||  | ||||| ||||  || ||||||||| |||||||    
T  23757068 ggaatttatgttcactcttcatcatgttcatcttcatcattttcttagtcaagttcttgctccaaaccccaacaaaggttct 23756987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 56 - 206
Target Start/End: Original strand, 49061524 - 49061674
Alignment:
Q  56 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 155  Q
    |||||||  ||| |||||||||||| ||||||||||||| ||||   ||||||  |||||||||||  | ||||||||||||||| ||||| ||||||||    
T  49061524 ttgcatctagttggcataactggtgggggcgaatcgaacctaaagactagtgtttcccacacacgctttagaatttatgtgcacacttcatcatgttcat 49061623  T
Q  156 cttcatcatattcttgatgaagttattgcagcagaccccaacacaggttct 206  Q
    |||| |||| || ||| | || ||||||||||||||||||||||| |||||    
T  49061624 cttcttcatctttttggtaaaattattgcagcagaccccaacacaagttct 49061674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 49053944 - 49054081
Alignment:
Q  56 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 155  Q
    |||||||| ||| | |||||||||| ||||||||||||| |||| ||||||||  |||||||||||  ||||||||||||| ||| ||||| ||||||||    
T  49053944 ttgcatccagttggtataactggtgggggcgaatcgaacctaaaggttagtgtttcccacacacgcattggaatttatgtgtacacttcatcatgttcat 49054043  T
Q  156 cttcatcatattcttgatgaagttattgcagcagacccc 194  Q
    |||| |||| || ||| | || |||| ||||||||||||    
T  49054044 cttcttcatctttttggt-aaattatcgcagcagacccc 49054081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 21432110 - 21432180
Alignment:
Q  124 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc 194  Q
    ||||||||||||||||| ||||  ||||||||||||||||| |||||| | ||||||||||||||||||||    
T  21432110 tggaatttatgtgcacacttcagcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccc 21432180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 44524463 - 44524533
Alignment:
Q  124 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc 194  Q
    ||||||||||||||| | ||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  44524463 tggaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttattgcaacagacccc 44524533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 35624776 - 35624693
Alignment:
Q  124 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcaga-ccccaacacaggttct 206  Q
    ||||||||||||||||| ||| | || |||||||||||||| |||||| | |||||||||||||||| |||||||||| |||||    
T  35624776 tggaatttatgtgcacacttcgtaatattcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttct 35624693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 48366498 - 48366557
Alignment:
Q  126 gaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgca 185  Q
    |||||||| |||||| ||||| ||||||||||||||||| |||||||| |||||||||||    
T  48366498 gaatttatttgcacacttcatcatgttcatcttcatcatcttcttgatcaagttattgca 48366557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 29681350 - 29681289
Alignment:
Q  124 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgca 185  Q
    |||||||||| |||||| ||||| ||||||||||||||||| |||||| | |||||||||||    
T  29681350 tggaatttatttgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgca 29681289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 43358510 - 43358433
Alignment:
Q  124 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcaga-ccccaacaca 200  Q
    ||||||| ||||||||  ||||| ||  ||||||||||||| |||||||| || ||||||||| ||| ||||||||||    
T  43358510 tggaattcatgtgcacgcttcatcatagtcatcttcatcatcttcttgatcaatttattgcagtagatccccaacaca 43358433  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 28696085 - 28695947
Alignment:
Q  56 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 155  Q
    ||||||| ||||  ||||||||||||||||||||| ||| |||| ||||||||| |||||||||||  ||||||||||| |||   ||||| ||||||||    
T  28696085 ttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatgcgcattcttcatcatgttcat 28695986  T
Q  156 cttcatcatattcttgatgaagttattgcagcagacccc 194  Q
     |||||||| |||||| | ||||||||||| || |||||    
T  28695985 attcatcatcttcttggtcaagttattgcaacaaacccc 28695947  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 12729541 - 12729644
Alignment:
Q  56 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcat 155  Q
    |||||||||||| ||||||||||||  ||||||||| || |||| ||||||||| ||||||||| |  ||||||| ||||| ||  ||||| ||||||||    
T  12729541 ttgcatccggttggcataactggtggaggcgaatcgtacctaaaggttagtgtgtcccacacactctttggaattcatgtgtacttttcatcatgttcat 12729640  T
Q  156 cttc 159  Q
    ||||    
T  12729641 cttc 12729644  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 25953607 - 25953674
Alignment:
Q  127 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc 194  Q
    |||||||||||||| ||||| || ||||||||||| || |||||| | ||||||||||| ||||||||    
T  25953607 aatttatgtgcacacttcatcatattcatcttcattatcttcttggttaagttattgcatcagacccc 25953674  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 188
Target Start/End: Original strand, 44729228 - 44729364
Alignment:
Q  56 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattca----ttatgt 151  Q
    |||||||||||| |||||||| |   ||| |||| |||| |||| ||||||||  |||||||||||  ||||||||||||||||  ||||    | ||||    
T  44729228 ttgcatccggttggcataactcgcaggggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcattcatgt 44729327  T
Q  152 tcatcttcatcatattcttgatgaagttattgcagca 188  Q
    |||| ||||| || |||||||| ||||||||| ||||    
T  44729328 tcattttcattatcttcttgatcaagttattgtagca 44729364  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 3415597 - 3415667
Alignment:
Q  124 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc 194  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||| | ||||||||||||||||||||    
T  3415597 tggaatttatgtgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccc 3415667  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 3425145 - 3425227
Alignment:
Q  124 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcaga-ccccaacacaggttc 205  Q
    ||||||||||||||||| || || ||||||||||||||||| |||||| | |||||||||||||||| |||||||||||||||    
T  3425145 tggaatttatgtgcacactttatcatgttcatcttcatcatcttcttggtcaagttattgcagcagatccccaacacaggttc 3425227  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 18736918 - 18736848
Alignment:
Q  124 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc 194  Q
    ||||||||||||||||| ||||| | ||||||||| ||||| |||||||  |||||||| |||||||||||    
T  18736918 tggaatttatgtgcacacttcatcaagttcatcttaatcatcttcttgaccaagttattacagcagacccc 18736848  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 18670597 - 18670524
Alignment:
Q  127 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagac-cccaacac 199  Q
    |||||||||||||| ||||| ||||||||||| ||||| |||||| | ||||||||||| ||||| ||||||||    
T  18670597 aatttatgtgcacacttcatcatgttcatctttatcatcttcttggtcaagttattgcaacagacgcccaacac 18670524  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 48779799 - 48779718
Alignment:
Q  83 ggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcatcttcatcat 164  Q
    |||||||||||| |||| ||||||||  |||||||||||  || ||||||| |||||| ||||| ||||||||||| |||||    
T  48779799 ggcgaatcgaacataaaggttagtgtatcccacacacgctttgaaatttatatgcacacttcatcatgttcatctttatcat 48779718  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 30020297 - 30020367
Alignment:
Q  126 gaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaa 196  Q
    |||||||| |||||| ||||| ||  ||||||||||||| |||||| | |||||||||||||||| |||||    
T  30020297 gaatttatatgcacacttcatcatagtcatcttcatcatcttcttggtcaagttattgcagcagatcccaa 30020367  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 20251618 - 20251710
Alignment:
Q  114 acacacgccatggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaacacaggttct 206  Q
    ||||||||  || |||||||||| ||  ||||| ||||||||||||||||| |||||  | ||  |||| |||||||||||||||||| ||||    
T  20251618 acacacgctttgaaatttatgtgtactcttcatcatgttcatcttcatcatcttcttagtcaaactattacagcagaccccaacacagattct 20251710  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 32429731 - 32429778
Alignment:
Q  126 gaatttatgtgcacaattcattatgttcatcttcatcatattcttgat 173  Q
    ||||||||||||||| ||||| |||||||||||||||||  |||||||    
T  32429731 gaatttatgtgcacacttcatcatgttcatcttcatcatcatcttgat 32429778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 18716245 - 18716175
Alignment:
Q  124 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc 194  Q
    |||||||||||| |||| ||||| | ||||||||| ||||| ||||||   |||||||| |||||||||||    
T  18716245 tggaatttatgtacacacttcatcaagttcatcttaatcatcttcttggccaagttattacagcagacccc 18716175  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 24129292 - 24129144
Alignment:
Q  59 catccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcattatgttcatctt 158  Q
    |||| |||| |||||||||||| ||| ||||| || |||||  ||| |||| ||| |||| ||  ||||||||||||||||  ||||| || |||||| |    
T  24129292 catctggttggcataactggtgggggagaatcaaagttaaagattaatgtgtcccgcacatgctttggaatttatgtgcacttttcatcatattcatcat 24129193  T
Q  159 catcatattcttgatgaagttattgcagcagacc-ccaacacaggttct 206  Q
    ||||   |||||||| || |||||  ||| |||| |||||||| |||||    
T  24129192 catcgccttcttgatcaaattattatagctgacctccaacacatgttct 24129144  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 47071166 - 47071118
Alignment:
Q  148 atgttcatcttcatcatattcttgatgaagttattgcagcagaccccaa 196  Q
    ||||||||||||||||| |||||  | ||||||||| ||||||||||||    
T  47071166 atgttcatcttcatcatcttcttagtcaagttattgtagcagaccccaa 47071118  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 42779936 - 42779878
Alignment:
Q  142 ttcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaacaca 200  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||    
T  42779936 ttcattatgttcatcttcatcatcttcttggtcaagttattgcagcagaccccaacaca 42779878  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 716118 - 716045
Alignment:
Q  126 gaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagaccccaacaca 200  Q
    ||||||||||| ||  ||||| || ||||| |||||||| |||||| | |||||||||||||||||| |||||||    
T  716118 gaatttatgtgtacgcttcatcatattcat-ttcatcatcttcttggtcaagttattgcagcagacctcaacaca 716045  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 16272183 - 16272130
Alignment:
Q  142 ttcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccca 195  Q
    ||||| ||||||||||| ||||| |||||  | |||||||||||||||||||||    
T  16272183 ttcatcatgttcatctttatcatcttcttagtcaagttattgcagcagacccca 16272130  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 28612044 - 28611983
Alignment:
Q  127 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagca 188  Q
    |||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||    
T  28612044 aatttatgtgcacacttcatcatgttcatattcatcatcttcttgatcaagttattgcagca 28611983  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 11932104 - 11932187
Alignment:
Q  56 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcac 139  Q
    |||||||||||| |||||||| ||| ||||||||| ||| |||| ||||||||| || ||||| ||  || |||||||||||||    
T  11932104 ttgcatccggttggcataactagtgggggcgaatcaaacctaaaggttagtgtgtccaacacatgctttgaaatttatgtgcac 11932187  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 24075706 - 24075623
Alignment:
Q  124 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgcagcagacccc-aacacaggttct 206  Q
    |||||||||| |||||| ||  | || |||||||| ||||| ||||| || |||||||||||||||||||| ||||||||||||    
T  24075706 tggaatttatatgcacactttgtcatattcatctttatcatcttcttaatcaagttattgcagcagacccctaacacaggttct 24075623  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 21937326 - 21937271
Alignment:
Q  127 aatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttatt 182  Q
    |||||||||||||| ||||| || |||||||||||||| |||||| | ||||||||    
T  21937326 aatttatgtgcacacttcatcatattcatcttcatcatcttcttggtcaagttatt 21937271  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 217956 - 218017
Alignment:
Q  124 tggaatttatgtgcacaattcattatgttcatcttcatcatattcttgatgaagttattgca 185  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||  | |||||||||||    
T  217956 tggaatttatgtgcactattcattatgttcatcttcatcatcttttttgtcaagttattgca 218017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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