View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14588_low_4 (Length: 419)
Name: NF14588_low_4
Description: NF14588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14588_low_4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 202 - 419
Target Start/End: Original strand, 34614562 - 34614779
Alignment:
| Q |
202 |
ttaacaccggttcaaaacttcgctagttacgtcacgaccgaataacccgaccaaacaccacaaactaatctcaaccgtccatatgaaacacaaccaacgg |
301 |
Q |
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| T |
34614562 |
ttaacaccggttcaaaacttcgctagttacgtcacgaccgaataacccgtacaaacaccacaaactaatctcaaccgtccatatcaaacacaatcaacgg |
34614661 |
T |
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| Q |
302 |
taatcacaatcgatccgcgtgattcattctcattggtccatccctccccatctcacaatataaaaaccttgctaccgccaatgttttcattcacttgaat |
401 |
Q |
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| T |
34614662 |
taatcacaatcgatccgcgtgattcattctcattggtccattcctccccatctcacaatataaaacccttgctaccgccaatgttttcattcacttgaat |
34614761 |
T |
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| Q |
402 |
ctttcatcttctacattc |
419 |
Q |
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| T |
34614762 |
ctttcatcttctacattc |
34614779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 34614375 - 34614526
Alignment:
| Q |
15 |
atatcccacatgttatgaaactcaagtgattgtgtggaatcaatacaaattttaattaaattctatnnnnnnnnnntaatcattgaaatttaatgtattg |
114 |
Q |
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| T |
34614375 |
atatcccacatgttatgaaactcaagtgattgtgtggaatcaatacaaattttaattaaattctataaaaaaaaaataatcattgaaatttaatgtattg |
34614474 |
T |
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| Q |
115 |
gaaaaatatttattacagacgtttctaaattaatttgaaaattttggtatag |
166 |
Q |
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| T |
34614475 |
gaaaaatatttattacagacgtttctaaattaatttgaaaattttggtatag |
34614526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 377
Target Start/End: Original strand, 34622071 - 34622194
Alignment:
| Q |
256 |
acaccacaaactaatctcaaccgtccatatgaaacacaaccaacggtaatcacaatcgatccgcgtgattcattctcattggtccatccctccccatct- |
354 |
Q |
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| T |
34622071 |
acaccacaaactaatctggaccgtccatatgaaacacaatcaacggcaacaagtatcgatccgcgtcattcaatctcattggtccaatcatccccatctc |
34622170 |
T |
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| Q |
355 |
-cacaatataaaaaccttgctacc |
377 |
Q |
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| T |
34622171 |
acacaatataaaaccctcgctacc |
34622194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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