View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14588_low_5 (Length: 400)
Name: NF14588_low_5
Description: NF14588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14588_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 74 - 386
Target Start/End: Original strand, 35066401 - 35066714
Alignment:
| Q |
74 |
accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactcatgattcaaatcactacaagaaaaactgttatttaccggagacatatgtgag |
173 |
Q |
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| T |
35066401 |
accaatacatgcaaaattgcaattttgttccgaataaagcgtatactcatgattcaaatcactacaagaaaaactgttatttgccggagacatatgtgag |
35066500 |
T |
|
| Q |
174 |
gg-catcaacccctaggaaatttgtcaaggggtagagacacgggtacgcctgagaaaatatattttaagagatttgggtatgacaagggttaagacgagg |
272 |
Q |
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| T |
35066501 |
gggcatcaatccctaggaaatttgtcagggggtagagacacgggtacgcctgagaaaatatattttaagagatttgggtatgacaagggttaagacgagg |
35066600 |
T |
|
| Q |
273 |
gttaacccttggaaaacatatttgaacctctaagaaatttgaggcagaaaacctccctccatttcaaatttgtttgaaactgagtgatgtaacacaacac |
372 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35066601 |
gttaacccttggaaaacatacttgaacctctgagaaatttgaggcagaaaacctccctccatttcaaatttgtttgaaactgagtgatgtaacacaacac |
35066700 |
T |
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| Q |
373 |
atgggttgtcagtg |
386 |
Q |
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| T |
35066701 |
atgggttgtcagtg |
35066714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 35066332 - 35066376
Alignment:
| Q |
5 |
agagagagatataaaaatacataaaaaggattgcatttcaaagac |
49 |
Q |
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| T |
35066332 |
agagagatatataaaaatacataaaaaggattgcatttcaaagac |
35066376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 36291994 - 36291937
Alignment:
| Q |
74 |
accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactcatgattcaaat |
132 |
Q |
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| T |
36291994 |
accaaaacatgcaaaattgaaattttgttccgcgt-aagtgtatactcataagtcaaat |
36291937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 1050692 - 1050656
Alignment:
| Q |
74 |
accaatacatgcaaaattgcaattttgttccgagtaa |
110 |
Q |
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||||| |||||||||||||||||||||||| |||||| |
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| T |
1050692 |
accaaaacatgcaaaattgcaattttgttcggagtaa |
1050656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 43069480 - 43069433
Alignment:
| Q |
74 |
accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactca |
122 |
Q |
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| T |
43069480 |
accaaaacatgcaaaattgaaattttgttccgcgt-aagtgtatactca |
43069433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 29743908 - 29743861
Alignment:
| Q |
74 |
accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactca |
122 |
Q |
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| T |
29743908 |
accaaaacatgcaaaattgaaattttgttccgcgt-aagtgtatactca |
29743861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 10352427 - 10352474
Alignment:
| Q |
74 |
accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactca |
122 |
Q |
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| T |
10352427 |
accaaaacatgcaaaattgaaattttgttccgtgt-aagtgtatactca |
10352474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 19565044 - 19565091
Alignment:
| Q |
74 |
accaatacatgcaaaattgcaattttgttccgagtaaagtgtatactca |
122 |
Q |
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||||| ||||||||||||| |||||||||||| || ||||||||||||| |
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| T |
19565044 |
accaaaacatgcaaaattgaaattttgttccgcgt-aagtgtatactca |
19565091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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