View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14588_low_6 (Length: 320)
Name: NF14588_low_6
Description: NF14588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14588_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 18365602 - 18365773
Alignment:
| Q |
15 |
actttggtgtagttagtcacagagtcacaagaattcaagtatcttcatattgttagaagaactgaaaagttgtaattcttaaatttttaaactcttatgt |
114 |
Q |
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| T |
18365602 |
actttggtgtagttagtaacagagtcatgaaaattcaagtatcatcatattgttagaagaactggaaagttgtaattcttaaattttcaaacttttatgt |
18365701 |
T |
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| Q |
115 |
gatatgttatcttcagatgggaaactacgtaaggaaaaatgaattgaaaaagcgcagagaaaatgatttgat |
186 |
Q |
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| T |
18365702 |
gatatgttatcttcagatgggaaactacgtaaggaaaaatgaattgaaaaagcgcagagaaaaggatttgat |
18365773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 30936477 - 30936665
Alignment:
| Q |
15 |
actttggtgtagttagtcacagagtcacaagaattcaagtatcttcatattgttagaagaactgaaaagttgtaattcttaaatttttaaactcttatgt |
114 |
Q |
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| T |
30936477 |
actttggtgtagttagtaacagagtcacgaaaattcaagtatcatcatattgttaga-gaactgcaaagttgtaattctgaaattttcaaactcttatct |
30936575 |
T |
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| Q |
115 |
gatatgttatcttcagatgggaaactacgtaaggaaaaatgaattgaaaaagcgcagagaaaatgatttgatttgatagaagacttgctactata |
209 |
Q |
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| T |
30936576 |
gatatgttatcttcagatgggaaactacgtaaggaaaaatgaattgaaaaagcgcagagaaaa-----ggaattgatagaagacttgctactata |
30936665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 18365846 - 18365897
Alignment:
| Q |
266 |
atcttgccctggacatttcataatggagctatatttttcttctgtctgtgtt |
317 |
Q |
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| T |
18365846 |
atcttgccctggacatttcataatggagctatatttttcttgtgtgtgtgtt |
18365897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 30936741 - 30936792
Alignment:
| Q |
266 |
atcttgccctggacatttcataatggagctatatttttcttctgtctgtgtt |
317 |
Q |
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| T |
30936741 |
atcttgccctggacatttcataatggagctatatttttcttgtgtgtgtgtt |
30936792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 22589179 - 22588990
Alignment:
| Q |
15 |
actttggtgtagttagtcacagagtcacaagaattcaagtatcttcatattgttagaagaactgaaaagttgtaattcttaaatttttaaactcttatgt |
114 |
Q |
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| T |
22589179 |
actttggtgtagttagtaacagggtcacgaaaattcaagtatcatcatattgttagaagaattgcaaagttgtaattcttaaattttcaaactcttatct |
22589080 |
T |
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| Q |
115 |
gatatgttatcttcagatgggaaactacgtaaggaaaaatgaattgaaaaagcgcagagaaaatgatttgatttgatagaagacttgctactata |
209 |
Q |
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| T |
22589079 |
gatatgttatcttcagatgggaaactacgtaaggaaaaatgaattgaaaaagcgcagagaaaa-----ggatttgatagaagacttgctactata |
22588990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 22588922 - 22588871
Alignment:
| Q |
266 |
atcttgccctggacatttcataatggagctatatttttcttctgtctgtgtt |
317 |
Q |
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| T |
22588922 |
atcttgccctagacatttcataatggagatatatttttcttgtgtgtgtgtt |
22588871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 15348306 - 15348212
Alignment:
| Q |
15 |
actttggtgtagttagtcacagagtcacaagaattcaagtatcttcatattgttagaagaactgaaaagttgtaattcttaaatttttaaactct |
109 |
Q |
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| T |
15348306 |
actttggtgtagttagtaacagagtcacgaaaattcaagtatcatcatattgttagaagaactgcaaagttgtaattcttaaattttcaaactct |
15348212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 15437371 - 15437277
Alignment:
| Q |
15 |
actttggtgtagttagtcacagagtcacaagaattcaagtatcttcatattgttagaagaactgaaaagttgtaattcttaaatttttaaactct |
109 |
Q |
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| T |
15437371 |
actttggtgtagttagtaacagagtcacgaaaattcaagtatcatcatattgttagaagaactgcaaagttgtaattcttaaattttcaaactct |
15437277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 15528675 - 15528581
Alignment:
| Q |
15 |
actttggtgtagttagtcacagagtcacaagaattcaagtatcttcatattgttagaagaactgaaaagttgtaattcttaaatttttaaactct |
109 |
Q |
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| T |
15528675 |
actttggtgtagttagtaacagagtcacgaaaattcaagtatcatcatattgttagaagaactgcaaagttgtaattcttaaattttcaaactct |
15528581 |
T |
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