View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14589_high_1 (Length: 726)
Name: NF14589_high_1
Description: NF14589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14589_high_1 |
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| [»] scaffold0009 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 18 - 708
Target Start/End: Original strand, 28283634 - 28284316
Alignment:
| Q |
18 |
gaaataggtggatgaattgcaagactactctaagaagtattgagtgtattgagtgtcaccgtacccatatgcatagagaaggaaatgttgttgtagacgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| || |
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| T |
28283634 |
gaaataggtggatgaattgcaagactactctaagaagtattgagtgg-----gtg-----gtacccatatacatagagaaggaaatgttgttgtagatgc |
28283723 |
T |
|
| Q |
118 |
tttagctaataatggccaaagcttaatgatattagctaataatgttgttggagaaacacaagaagaaaatgttgttggagatgattctacagattcacca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28283724 |
tttagctaataatggccaaagcttaatgatattagctaataatgttgttggagaaacacaagaagaaaatgttgttggagatgattctacagattcacca |
28283823 |
T |
|
| Q |
218 |
ctcactaaaatgcggggtgcacgacaaaactcttcaagccacattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaagcg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28283824 |
ctcactaaaatgcggggtgcacgacaaaactcttcaagccacattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaagcg |
28283923 |
T |
|
| Q |
318 |
taatgaaaggtttaacctctgctgcacttagttgttttccgacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaagta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28283924 |
taatgaaaggtttaacctctgctgcacttagttgttttccgacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaagta |
28284023 |
T |
|
| Q |
418 |
tgaagttctgtgaatagcataatgtattaatgttaaaaatatatttaacctaaaatgatatatat--acactaacatattctaatggatgaatatatatc |
515 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28284024 |
tgaagttctgtgaataacataatgtattaatgttaaaaatatatttaacctaaaatgatatatatacacactaacatattctaatggatgaatatatatc |
28284123 |
T |
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| Q |
516 |
attaaaatgcagaactgcaaagttgaattaaggaatttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactcata |
615 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| |
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| T |
28284124 |
ataaaaatgcagaactgcaaagttgaattaaggaatttacttgtcaaattcagggtgcatggtgttatcccaccctttaggatcaacaacattactcata |
28284223 |
T |
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| Q |
616 |
gttgagtaagcaaagataattttaggataagtcatccatgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaat |
708 |
Q |
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| T |
28284224 |
gttgagtaagcaaagataattttaggataagtcatccatgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaat |
28284316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 210 - 448
Target Start/End: Original strand, 31113912 - 31114154
Alignment:
| Q |
210 |
attcaccactcactaaaatgcggggtgcacgacaaaactcttcaagccacat----taattagacttttggaggaggaaggagccatttagatccttgaa |
305 |
Q |
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|||||||||||||||||||| |||||||| | |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31113912 |
attcaccactcactaaaatgtggggtgcaaggcaaaactcttgaagccacatacattaattagacttttggaggaggaaggagccattttgatccttgaa |
31114011 |
T |
|
| Q |
306 |
tcattccaagcgtaatgaaaggtttaacctctgctgcacttagttgttttccgacagttgcacgtcctttgggatctgactttggtcctgtgttctgata |
405 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||| ||| || | || |||| ||||| |||||||| |||||||||||||| ||||| |
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| T |
31114012 |
tcattccaagtgtaatgaaaggtttaacctctgcttcacttagttgctttgtgatacttacacgccctttcggatctgattttggtcctgtgttttgata |
31114111 |
T |
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| Q |
406 |
ttctccaaagtatgaagttctgtgaatagcataatgtattaat |
448 |
Q |
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| T |
31114112 |
ttctccaaagtatgatgttctgcagataagataatgtattaat |
31114154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 552 - 708
Target Start/End: Original strand, 31114225 - 31114381
Alignment:
| Q |
552 |
ttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactcatagttgagtaagcaaagataattttaggataagtcatc |
651 |
Q |
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||||||||||||||||||||||| | |||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31114225 |
ttacttgtcaaattcagggtgcatgccattatcccatccttttggatgaacaacattggtcatagttgagtaagcatagataattttaggataagtcatc |
31114324 |
T |
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| Q |
652 |
catgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaat |
708 |
Q |
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|||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||| |
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| T |
31114325 |
catgctctagctaagaaagtagtagttccagttccagtaatatcacaatgcacaaat |
31114381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 133; Significance: 9e-69; HSPs: 4)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 258 - 430
Target Start/End: Complemental strand, 174488 - 174316
Alignment:
| Q |
258 |
acattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaagcgtaatgaaaggtttaacctctgctgcacttagttgttttcc |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||| ||| | |
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| T |
174488 |
acattaattagacttttggaggaggaaggagccatttagatgcttgaatcattccaagtgtaatgaaaggtttaacctctgcttcagttagttgctttgc |
174389 |
T |
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| Q |
358 |
gacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
430 |
Q |
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||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
174388 |
aacacttgcacgccctttaggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
174316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 258 - 430
Target Start/End: Complemental strand, 180001 - 179829
Alignment:
| Q |
258 |
acattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaagcgtaatgaaaggtttaacctctgctgcacttagttgttttcc |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||| ||| | |
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| T |
180001 |
acattaattagacttttggaggaggaaggagccatttagatgcttgaatcattccaagtgtaatgaaaggtttaacctctgcttcagttagttgctttgc |
179902 |
T |
|
| Q |
358 |
gacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
430 |
Q |
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||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
179901 |
aacacttgcacgccctttaggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
179829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 552 - 708
Target Start/End: Complemental strand, 173597 - 173441
Alignment:
| Q |
552 |
ttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactcatagttgagtaagcaaagataattttaggataagtcatc |
651 |
Q |
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||||||||||||||||||||||| || ||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||| |
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| T |
173597 |
ttacttgtcaaattcagggtgcatggcgttatcccaccctttgggattaacaacattggtcatagttgagtaagcatagataattttgggataagtcatc |
173498 |
T |
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| Q |
652 |
catgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaat |
708 |
Q |
| |
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||||| || ||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
173497 |
catgccctagctaagaaagtggaagatccagttccagtaatatcacaatgcacaaat |
173441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 552 - 708
Target Start/End: Complemental strand, 179110 - 178954
Alignment:
| Q |
552 |
ttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactcatagttgagtaagcaaagataattttaggataagtcatc |
651 |
Q |
| |
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||||||||||||||||||||||| || ||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||| |
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| T |
179110 |
ttacttgtcaaattcagggtgcatggcgttatcccaccctttgggattaacaacattggtcatagttgagtaagcatagataattttgggataagtcatc |
179011 |
T |
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| Q |
652 |
catgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaat |
708 |
Q |
| |
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||||| || ||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
179010 |
catgccctagctaagaaagtggaagatccagttccagtaatatcacaatgcacaaat |
178954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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