View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14589_high_13 (Length: 272)
Name: NF14589_high_13
Description: NF14589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14589_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 48225110 - 48224865
Alignment:
| Q |
16 |
aaagacagattcacaaatgaatgaatgtgtataaatcttgttttaattttttatttggttagtgatcagagaaagatcgtgaatgagtggggttgcaagc |
115 |
Q |
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| T |
48225110 |
aaagacagattcacaaatgaatgaatgtgtataaatcttgttttaattttttatttggttagtgatcagagaaagatagtgaatgagtggggttgcaagc |
48225011 |
T |
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| Q |
116 |
atgcatgcatgttaccacagaatttggagccatgtgctttgagtcacacatttcacatcttttgcnnnnnnnnnnnnaactgtgcacgccgatattggat |
215 |
Q |
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| T |
48225010 |
atgcatgcatgttaccacagaatttggagccatgtgc-ttgagtcacacatttcacatcttttgc--tgtgtgtgtcaactgtgcacgccgatattggat |
48224914 |
T |
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| Q |
216 |
cactatggcggtgcaccaatactagaagctgaggatattttcgtattct |
264 |
Q |
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| T |
48224913 |
cactatggcggtgcaccaatactagaagctgaggatattttcgtattct |
48224865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 54528543 - 54528460
Alignment:
| Q |
26 |
tcacaaatgaatgaatgtgtataaatcttgttttaattttttatttggttagtgatcagagaaagatcgtgaatgagtggggtt |
109 |
Q |
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| T |
54528543 |
tcacaaatgaatgaatgtgcacaaatattattttaattttttatttggttagtgatgagagaaagatagtgaatgaatggggtt |
54528460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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