View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14589_high_2 (Length: 618)
Name: NF14589_high_2
Description: NF14589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14589_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 38 - 610
Target Start/End: Original strand, 30400668 - 30401240
Alignment:
| Q |
38 |
agatggattatgttagcaattgataactaaaaagagttggtaattaatatttgattagtttagtgtaaataattttgctttgtgtctacctgaatagtaa |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30400668 |
agatggattatgttagcaattgataactaaaaagagttggtaattaatatttgattagtttagtgtaaataattttgctttgtgtctacctgaatagtaa |
30400767 |
T |
|
| Q |
138 |
attctatgcttggataaccatgcatcacattattctgatccttgaggtgtcaacccagcggtaaaagtttgaacttgtaacttcaaaagagacggagttc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30400768 |
attctatgcttggataaccatgcatcacattattctgatccttgaggtgtcaacccagcggtaaaagtttgaacttgtaacttcaaaagagacggagttc |
30400867 |
T |
|
| Q |
238 |
aaatccccttagagatagtagtaataaccattattgccatttggatatgaatgtcttttattaattgtaactcattctgtggtttgtgatcagaataaag |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30400868 |
aaatccccttagagatagtagtaataaccattattgccatttggatatgaatgtcttgtattaattgtaactcattctgtggtttgtgatcagaataaag |
30400967 |
T |
|
| Q |
338 |
taaatggcaatgatgttacatatgctgataatggcaatctatctgaccgagatgaggttaaagccggctacagtgacaatactcgcagttctgttcacgc |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30400968 |
taaatggcaatgatgttacatatgctgataatggcaatctatctgaccgagatgaggttaaagccggctacagtgacaatactcgcagttctgttcacgc |
30401067 |
T |
|
| Q |
438 |
ttcttcaactaatttgttgaatcctaccagtcgattcctttctcagttcggcatcactcctggtaatcaaagctccagatttagcatatttaccggttca |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30401068 |
ttcttcaactaatttgttgaatcctaccagtcgattcctttctcagttcggcatcactcctggtaatcaaagctccagatttagcatatttaccggttca |
30401167 |
T |
|
| Q |
538 |
aggtcatcgaggccttgtcctgtttcttctacaagactttcaatatttggcaatgatgttgagaataatctac |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30401168 |
aggtcatcgaggccttgtcctgtttcttctacaagactttcaatatttggcaatgatgttgagcgtaatctac |
30401240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 10786022 - 10785981
Alignment:
| Q |
318 |
ggtttgtgatcagaataaagtaaatggcaatgatgttacata |
359 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
10786022 |
ggtttgtgatcagaataaagtaaatggaagtgatgttacata |
10785981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University