View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14589_high_4 (Length: 518)

Name: NF14589_high_4
Description: NF14589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14589_high_4
NF14589_high_4
[»] chr4 (16 HSPs)
chr4 (8-501)||(4227894-4228387)
chr4 (1-104)||(47597566-47597669)
chr4 (15-88)||(34389795-34389868)
chr4 (15-88)||(36894406-36894479)
chr4 (14-70)||(44307583-44307639)
chr4 (14-70)||(1217218-1217274)
chr4 (14-70)||(1369493-1369549)
chr4 (20-88)||(11896048-11896116)
chr4 (14-70)||(28945360-28945416)
chr4 (452-491)||(4235417-4235456)
chr4 (455-496)||(18878281-18878322)
chr4 (455-494)||(33480499-33480538)
chr4 (455-500)||(16582326-16582371)
chr4 (452-501)||(27066333-27066382)
chr4 (452-501)||(27087434-27087483)
chr4 (454-491)||(54886602-54886639)
[»] chr7 (17 HSPs)
chr7 (1-104)||(24468620-24468723)
chr7 (1-104)||(24473568-24473671)
chr7 (13-88)||(48619070-48619145)
chr7 (14-70)||(8035770-8035826)
chr7 (23-88)||(8019742-8019807)
chr7 (14-70)||(5350053-5350109)
chr7 (14-70)||(38110666-38110722)
chr7 (452-500)||(41601537-41601585)
chr7 (14-69)||(46045967-46046022)
chr7 (452-491)||(8118796-8118835)
chr7 (452-491)||(13014960-13014999)
chr7 (452-491)||(15633333-15633372)
chr7 (452-491)||(32480319-32480358)
chr7 (452-491)||(47081649-47081688)
chr7 (454-500)||(3896571-3896617)
chr7 (453-491)||(44675449-44675487)
chr7 (454-491)||(42510034-42510071)
[»] chr5 (15 HSPs)
chr5 (1-104)||(18934173-18934276)
chr5 (1-104)||(4560292-4560395)
chr5 (8-104)||(18883501-18883597)
chr5 (452-500)||(16088655-16088703)
chr5 (8-94)||(42131416-42131502)
chr5 (23-104)||(34080736-34080817)
chr5 (14-70)||(239963-240019)
chr5 (14-70)||(14024994-14025050)
chr5 (13-88)||(22540346-22540421)
chr5 (14-70)||(32386547-32386603)
chr5 (29-89)||(32786038-32786098)
chr5 (46-89)||(1189121-1189164)
chr5 (452-491)||(2157774-2157813)
chr5 (452-500)||(18759819-18759867)
chr5 (452-500)||(29754942-29754990)
[»] chr3 (18 HSPs)
chr3 (1-104)||(54812224-54812327)
chr3 (1-104)||(46428676-46428779)
chr3 (1-104)||(42794606-42794709)
chr3 (13-88)||(27156155-27156230)
chr3 (1-104)||(43912228-43912331)
chr3 (13-88)||(54346871-54346946)
chr3 (454-494)||(12526582-12526622)
chr3 (452-500)||(31809266-31809314)
chr3 (14-70)||(37503148-37503204)
chr3 (455-491)||(16877967-16878003)
chr3 (452-491)||(8566118-8566157)
chr3 (452-491)||(16739427-16739466)
chr3 (14-69)||(25905871-25905926)
chr3 (13-83)||(43813088-43813158)
chr3 (456-494)||(45004297-45004335)
chr3 (454-491)||(42626151-42626188)
chr3 (452-500)||(31935344-31935392)
chr3 (454-494)||(49499516-49499556)
[»] chr1 (19 HSPs)
chr1 (1-103)||(22065177-22065279)
chr1 (13-88)||(5308778-5308853)
chr1 (13-88)||(42677327-42677402)
chr1 (13-87)||(8059849-8059923)
chr1 (13-83)||(23949839-23949909)
chr1 (13-88)||(23084898-23084973)
chr1 (452-500)||(21701461-21701509)
chr1 (13-88)||(50952555-50952630)
chr1 (14-70)||(16855004-16855060)
chr1 (23-83)||(34553870-34553930)
chr1 (14-69)||(6294076-6294131)
chr1 (454-495)||(26333612-26333653)
chr1 (14-69)||(39476120-39476175)
chr1 (455-492)||(28385218-28385255)
chr1 (452-501)||(47726367-47726416)
chr1 (452-501)||(47747673-47747722)
chr1 (14-70)||(28706051-28706107)
chr1 (455-491)||(38488868-38488904)
chr1 (452-500)||(49372422-49372470)
[»] chr8 (17 HSPs)
chr8 (1-104)||(44145824-44145927)
chr8 (1-104)||(38560594-38560697)
chr8 (452-500)||(27978849-27978897)
chr8 (452-500)||(28036118-28036166)
chr8 (20-80)||(1362962-1363022)
chr8 (14-70)||(42000334-42000390)
chr8 (14-70)||(45093500-45093556)
chr8 (13-88)||(1636134-1636209)
chr8 (13-88)||(26616714-26616789)
chr8 (24-70)||(35808261-35808307)
chr8 (454-491)||(13700133-13700170)
chr8 (16-84)||(9031587-9031655)
chr8 (455-491)||(22897968-22898004)
chr8 (13-88)||(456348-456423)
chr8 (452-487)||(34723854-34723889)
chr8 (452-491)||(37590034-37590073)
chr8 (14-70)||(33373257-33373313)
[»] chr2 (14 HSPs)
chr2 (1-104)||(17290149-17290252)
chr2 (13-88)||(13187024-13187099)
chr2 (13-74)||(7305068-7305129)
chr2 (13-89)||(6599054-6599130)
chr2 (26-87)||(26381267-26381328)
chr2 (14-69)||(40615032-40615087)
chr2 (14-68)||(11995725-11995779)
chr2 (13-83)||(37307282-37307352)
chr2 (20-88)||(6372673-6372741)
chr2 (452-500)||(23379972-23380020)
chr2 (14-70)||(42865976-42866032)
chr2 (13-88)||(40426155-40426230)
chr2 (454-502)||(23762494-23762542)
chr2 (21-81)||(24467731-24467791)
[»] chr6 (6 HSPs)
chr6 (1-64)||(1222956-1223019)
chr6 (452-491)||(9959331-9959370)
chr6 (452-491)||(31029232-31029271)
chr6 (452-501)||(34355731-34355780)
chr6 (455-491)||(6695686-6695722)
chr6 (452-500)||(30140926-30140974)
[»] scaffold0789 (1 HSPs)
scaffold0789 (455-500)||(4204-4249)
[»] scaffold0040 (1 HSPs)
scaffold0040 (452-491)||(62485-62524)
[»] scaffold0736 (1 HSPs)
scaffold0736 (20-89)||(6520-6589)


Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 501
Target Start/End: Complemental strand, 4228387 - 4227894
Alignment:
Q  8 ttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagctaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4228387 ttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagctaca 4228288  T
Q  108 ttttctcttgttggtataaagattgttttgnnnnnnngagtaaatggaataaaagatgaaggcacaagnnnnnnngctatatttttgtctaggataaagg 207  Q
    |||||| ||||||| |||||||||||||||       |||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||    
T  4228287 ttttctattgttggaataaagattgttttgtttttttgagtaaatggaataaaagatgaaggcgcaagaaaaaaagctatatttttgtctaggataaagg 4228188  T
Q  208 tgattaataggatagtatattttatacgaaaatatactattggaagctggcttctagtagtggatggaaagagaagagatatttgaatgagttcactgaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4228187 tgattaataggatagtatattttatacgaaaatatactattggaagctggcttctagtagtggatggaaagagaagagatatttgaatgagttcactgaa 4228088  T
Q  308 aaacacataaatagagaaggttctctcaataggatctccgatcctagtaacactgactttctataacttagcataatttatcatacagagacagacagtc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  4228087 aaacacataaatagagaaggttctctcaataggatctccgatcctagtaacactgactttctataacttagcacaatttatcatacacagacagacagtc 4227988  T
Q  408 caaaacacacataaccacaaacacataaccgccgtttattatggcaattgtattgaaactattatgattaatgaaatgctataaacacgtttct 501  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4227987 caaaacacacataaccacaaacacataaccgccgtttattatgacaattgtattgaaactattatgattaatgaaatgctataaacacgtttct 4227894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 47597566 - 47597669
Alignment:
Q  1 caaatgcttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 100  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  47597566 caaatgattcacaaaaatgctaaaattagcaagccaatcggcacttctatttcctttatgccaagtatggttgatttgcacatgccaatccattctcagc 47597665  T
Q  101 agct 104  Q
    ||||    
T  47597666 agct 47597669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 34389795 - 34389868
Alignment:
Q  15 aaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||| |||||||| |||||||| ||||| ||||||||||||||| |||||||||||| ||| |||| ||||    
T  34389795 aaatgcttaaattagcgagccaatcagcactcctatttccttcacgctaagtatggttgagttgaacattccaa 34389868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 36894406 - 36894479
Alignment:
Q  15 aaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||| |||||||| ||||||||  |||| |||||||||||||||||||||||||||| ||| |||| ||||    
T  36894406 aaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggttgagttgaacattccaa 36894479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 44307639 - 44307583
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||    
T  44307639 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcacgccaagtatgg 44307583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 1217274 - 1217218
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  1217274 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 1217218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 1369549 - 1369493
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  1369549 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 1369493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11896048 - 11896116
Alignment:
Q  20 ctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||||||| |||||||| ||   |||||||||||||||||| ||||||||||| || |||||||||    
T  11896048 ctaaaattagctagccaatctgctgatctatttccttcacgccatgtatggttgatatgaacatgccaa 11896116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 28945360 - 28945416
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  28945360 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 28945416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 491
Target Start/End: Original strand, 4235417 - 4235456
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataa 491  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  4235417 caattgtattgagactattatgattaatgaaatgctataa 4235456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 455 - 496
Target Start/End: Original strand, 18878281 - 18878322
Alignment:
Q  455 ttgtattgaaactattatgattaatgaaatgctataaacacg 496  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  18878281 ttgtattgaaactattattattaatgaaatgctataagcacg 18878322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 494
Target Start/End: Original strand, 33480499 - 33480538
Alignment:
Q  455 ttgtattgaaactattatgattaatgaaatgctataaaca 494  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  33480499 ttgtattgaatctattattattaatgaaatgctataaaca 33480538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 16582371 - 16582326
Alignment:
Q  455 ttgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    |||||||||||||||||| |||||||| ||||||||| || |||||    
T  16582371 ttgtattgaaactattattattaatgatatgctataatcatgtttc 16582326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 27066382 - 27066333
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttct 501  Q
    |||||||||||||||| | || |||||||||||||||||| ||| |||||    
T  27066382 caattgtattgaaactttgattattaatgaaatgctataagcacatttct 27066333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 27087483 - 27087434
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttct 501  Q
    |||||||||||||||| | || |||||||||||||||||| ||| |||||    
T  27087483 caattgtattgaaactttgattattaatgaaatgctataagcacatttct 27087434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 491
Target Start/End: Original strand, 54886602 - 54886639
Alignment:
Q  454 attgtattgaaactattatgattaatgaaatgctataa 491  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  54886602 attgtattgaatctattatcattaatgaaatgctataa 54886639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 24468723 - 24468620
Alignment:
Q  1 caaatgcttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24468723 caaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 24468624  T
Q  101 agct 104  Q
    ||||    
T  24468623 agct 24468620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 24473671 - 24473568
Alignment:
Q  1 caaatgcttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24473671 caaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 24473572  T
Q  101 agct 104  Q
    ||||    
T  24473571 agct 24473568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 48619145 - 48619070
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||||| |||||||| |||||||| |||||  ||||||||||||||||||||||||||| ||| |||| ||||    
T  48619145 agaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaagtatggttgagttgaacattccaa 48619070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 8035826 - 8035770
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||    
T  8035826 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcacgccaagtatgg 8035770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 8019742 - 8019807
Alignment:
Q  23 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||| ||| ||| |||| ||||    
T  8019742 aaattagcgagccaatcagcactcctatttccttcacgccaagtatgggtgagttgaacattccaa 8019807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 5350109 - 5350053
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||||||||||||||| |||||| | || ||||||||||||||||||    
T  5350109 gaaatgctgaaattagcaagccaatctgcacttttgttgccttcacgccaagtatgg 5350053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 38110666 - 38110722
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  38110666 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 38110722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 500
Target Start/End: Original strand, 41601537 - 41601585
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    |||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  41601537 caattgtattgaaactattatgatgagtgaaatgctataagcacgtttc 41601585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 46046022 - 46045967
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 69  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| |||||||||||    
T  46046022 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatg 46045967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Complemental strand, 8118835 - 8118796
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataa 491  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  8118835 caattgtattgagactattatgatcaatgaaatgctataa 8118796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Complemental strand, 13014999 - 13014960
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataa 491  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  13014999 caattgtattgaaactattattatcaatgaaatgctataa 13014960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Original strand, 15633333 - 15633372
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataa 491  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  15633333 caattgtattgaaactattattatcaatgaaatgctataa 15633372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Original strand, 32480319 - 32480358
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataa 491  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  32480319 caattgtattgaaactcttattattaatgaaatgctataa 32480358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Complemental strand, 47081688 - 47081649
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataa 491  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  47081688 caattgtattgagactattatgatcaatgaaatgctataa 47081649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 500
Target Start/End: Original strand, 3896571 - 3896617
Alignment:
Q  454 attgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    |||||||||||||| |||| |||||||||||||||||| || |||||    
T  3896571 attgtattgaaactcttattattaatgaaatgctataagcatgtttc 3896617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 491
Target Start/End: Original strand, 44675449 - 44675487
Alignment:
Q  453 aattgtattgaaactattatgattaatgaaatgctataa 491  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  44675449 aattgtattgaaacgattattattaatgaaatgctataa 44675487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 491
Target Start/End: Complemental strand, 42510071 - 42510034
Alignment:
Q  454 attgtattgaaactattatgattaatgaaatgctataa 491  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  42510071 attgtattgaaactattatcattaatgaaatgttataa 42510034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 18934276 - 18934173
Alignment:
Q  1 caaatgcttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934276 caaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 18934177  T
Q  101 agct 104  Q
    ||||    
T  18934176 agct 18934173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 4560292 - 4560395
Alignment:
Q  1 caaatgcttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 100  Q
    |||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4560292 caaatgattcacagaaatgctaaaattagcaagtcaatcagcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 4560391  T
Q  101 agct 104  Q
    ||||    
T  4560392 agct 4560395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 18883597 - 18883501
Alignment:
Q  8 ttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagct 104  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  18883597 ttcacaaaaatgctaaaattagcaagccaatcggcatatctatttccttcgcgccaagtatggttgatttgcacatgtcaatccattctcagtagct 18883501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 452 - 500
Target Start/End: Original strand, 16088655 - 16088703
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  16088655 caattatattgaaactattatgattaatgaaatgctataagcacgtttc 16088703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 42131502 - 42131416
Alignment:
Q  8 ttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccatt 94  Q
    |||||||||||| |||||| |||||| |||||| |||||||||||||||  | | ||| |||  |||||||||||||||||| ||||    
T  42131502 ttcacagaaatgttaaaatgagcaagtcaatcgacacttctatttcctttccactaagcatgactgatttgcacatgccaattcatt 42131416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 34080736 - 34080817
Alignment:
Q  23 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagct 104  Q
    |||||||||||||||||  ||||  | ||||||||||||||||||||||||| ||| |||| |||| ||||  |||||||||    
T  34080736 aaattagcaagccaatcaacactcatgtttccttcacgccaagtatggttgagttgaacattccaacccatcttcagcagct 34080817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 239963 - 240019
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  239963 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 240019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 14025050 - 14024994
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  14025050 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 14024994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 22540421 - 22540346
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||||| |||||||| || |||||  |||| |||||||||| ||||||||||||||||| ||| |||| ||||    
T  22540421 agaaatgcttaaattagcgagtcaatcaacactcctatttcctttacgccaagtatggttgagttgaacattccaa 22540346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 32386603 - 32386547
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||||||||| ||||| |||||| | || ||||||||||||||||||    
T  32386603 gaaatgctgaaattagcaagtcaatcagcacttatgttgccttcacgccaagtatgg 32386547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 32786098 - 32786038
Alignment:
Q  29 gcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaat 89  Q
    |||| ||||||  ||||| ||||||||||||  |||||||| |||||||||||||||||||    
T  32786098 gcaaaccaatcaacacttttatttccttcacaacaagtatgattgatttgcacatgccaat 32786038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 1189164 - 1189121
Alignment:
Q  46 tctatttccttcacgccaagtatggttgatttgcacatgccaat 89  Q
    |||||| |||||||| ||||||||||| ||||||||||||||||    
T  1189164 tctattgccttcacgtcaagtatggttaatttgcacatgccaat 1189121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Complemental strand, 2157813 - 2157774
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataa 491  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  2157813 caattgtattgaaactattattatcaatgaaatgctataa 2157774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 500
Target Start/End: Original strand, 18759819 - 18759867
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    ||||| |||||||||| |||| |||||||||||||||||| || |||||    
T  18759819 caattatattgaaacttttattattaatgaaatgctataagcatgtttc 18759867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 500
Target Start/End: Complemental strand, 29754990 - 29754942
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    |||||||||||||||| | || |||||||||||||||||| ||| ||||    
T  29754990 caattgtattgaaactttgattattaatgaaatgctataagcacctttc 29754942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 8e-47; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 54812224 - 54812327
Alignment:
Q  1 caaatgcttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54812224 caaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgctaatccattctcagc 54812323  T
Q  101 agct 104  Q
    ||||    
T  54812324 agct 54812327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 46428779 - 46428676
Alignment:
Q  1 caaatgcttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 100  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46428779 caaatgattcacataaatgctaaaattagcaagccaatcggcacttctatttccttcatgccaagtatggttgatttgcacatgccaatccattctcagc 46428680  T
Q  101 agct 104  Q
    ||||    
T  46428679 agct 46428676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 42794709 - 42794606
Alignment:
Q  1 caaatgcttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 100  Q
    |||||| |||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42794709 caaatgattcacatatattctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 42794610  T
Q  101 agct 104  Q
    ||||    
T  42794609 agct 42794606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 27156155 - 27156230
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||| |||| ||||    
T  27156155 agaaatgctgaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagttgaacattccaa 27156230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 43912228 - 43912331
Alignment:
Q  1 caaatgcttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 100  Q
    |||||| |||||||||||| |||||||||||||  |||   ||||| ||||| |||| |||||  |||||||||||||||| |||||||||||| ||| |    
T  43912228 caaatgattcacagaaatgttaaaattagcaaggtaatatacacttatattttcttcgcgccagatatggttgatttgcacttgccaatccattttcaac 43912327  T
Q  101 agct 104  Q
    ||||    
T  43912328 agct 43912331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 54346946 - 54346871
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||| ||| ||| |||| ||||    
T  54346946 agaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgggtgagttgaacattccaa 54346871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 494
Target Start/End: Complemental strand, 12526622 - 12526582
Alignment:
Q  454 attgtattgaaactattatgattaatgaaatgctataaaca 494  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  12526622 attgtattgaaactattattattaatgaaatgctataaaca 12526582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 500
Target Start/End: Original strand, 31809266 - 31809314
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    |||||||||||| |||||||| ||||||||||||||||||||| |||||    
T  31809266 caattgtattgagactattataattaatgaaatgctataaacatgtttc 31809314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 37503204 - 37503148
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||||    
T  37503204 gaaatgctaaaattagcaagtcaatctgcacttctgttgccttcacgtcaagtatgg 37503148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 491
Target Start/End: Complemental strand, 16878003 - 16877967
Alignment:
Q  455 ttgtattgaaactattatgattaatgaaatgctataa 491  Q
    |||||||||||||||||| ||||||||||||||||||    
T  16878003 ttgtattgaaactattattattaatgaaatgctataa 16877967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Original strand, 8566118 - 8566157
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataa 491  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  8566118 caattgtattgagactattatgatcaatgaaatgctataa 8566157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Complemental strand, 16739466 - 16739427
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataa 491  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  16739466 caattgtattgaaactattattatcaatgaaatgctataa 16739427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 25905926 - 25905871
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 69  Q
    |||||||| ||||||||||| ||||| |||||||| || ||||||| |||||||||    
T  25905926 gaaatgctgaaattagcaagtcaatctgcacttctgttgccttcacaccaagtatg 25905871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 43813158 - 43813088
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacat 83  Q
    ||||||||| || ||||| || ||||| ||||| | |||||||||||||||| ||||||||| ||| ||||    
T  43813158 agaaatgcttaagttagcgagtcaatcagcactccaatttccttcacgccaattatggttgagttgaacat 43813088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 494
Target Start/End: Original strand, 45004297 - 45004335
Alignment:
Q  456 tgtattgaaactattatgattaatgaaatgctataaaca 494  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  45004297 tgtattgaacctattattattaatgaaatgctataaaca 45004335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 491
Target Start/End: Original strand, 42626151 - 42626188
Alignment:
Q  454 attgtattgaaactattatgattaatgaaatgctataa 491  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  42626151 attgtattgaaactattattattaataaaatgctataa 42626188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 500
Target Start/End: Original strand, 31935344 - 31935392
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    ||||||||||||| || | ||||||||||||||||| ||| ||||||||    
T  31935344 caattgtattgaatctttgatgattaatgaaatgctctaagcacgtttc 31935392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 494
Target Start/End: Original strand, 49499516 - 49499556
Alignment:
Q  454 attgtattgaaactattatgattaatgaaatgctataaaca 494  Q
    ||||||||||| || |||| |||||||||||||||||||||    
T  49499516 attgtattgaatctcttattattaatgaaatgctataaaca 49499556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 22065177 - 22065279
Alignment:
Q  1 caaatgcttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 100  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22065177 caaatgattcacagatatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 22065276  T
Q  101 agc 103  Q
    |||    
T  22065277 agc 22065279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 5308853 - 5308778
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||| |||| ||||    
T  5308853 agaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagttgaacattccaa 5308778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 42677402 - 42677327
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||| |||| ||||    
T  42677402 agaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagttgaacattccaa 42677327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 8059849 - 8059923
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgcca 87  Q
    ||||| ||||||||||||||||||||| |||||||||||||| || ||||| |||||||||| |||||| |||||    
T  8059849 agaaaagctaaaattagcaagccaatcagcacttctatttccctcgcgccaggtatggttgaattgcacctgcca 8059923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 23949909 - 23949839
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacat 83  Q
    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||| ||||    
T  23949909 agaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagttgaacat 23949839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 23084898 - 23084973
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||| ||||||||| ||| |||| ||||    
T  23084898 agaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaaatatggttgagttgaacattccaa 23084973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 452 - 500
Target Start/End: Complemental strand, 21701509 - 21701461
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  21701509 caattgtattgaaactcttatgattaatgaaatgctataagcacgtttc 21701461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 50952555 - 50952630
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||||| | |||||| |||||||| ||||| |||||| ||||||||||||||||||||| ||| |||| ||||    
T  50952555 agaaatgcttatattagcgagccaatcagcactcctattttcttcacgccaagtatggttgagttgaacattccaa 50952630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 16855060 - 16855004
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  16855060 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 16855004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 34553870 - 34553930
Alignment:
Q  23 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacat 83  Q
    |||||||| || ||||| ||||||||||||||||||| |||||||||||||| ||| ||||    
T  34553870 aaattagcgagtcaatcagcacttctatttccttcacaccaagtatggttgagttgaacat 34553930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 6294131 - 6294076
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 69  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| |||||||||||    
T  6294131 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatg 6294076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 454 - 495
Target Start/End: Complemental strand, 26333653 - 26333612
Alignment:
Q  454 attgtattgaaactattatgattaatgaaatgctataaacac 495  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  26333653 attgtattgaaattattatcattaatgaaatgctataaacac 26333612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 39476175 - 39476120
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 69  Q
    |||||||| ||||||||||| ||||| |||||| | || |||||||||||||||||    
T  39476175 gaaatgctgaaattagcaagacaatctgcacttttgttgccttcacgccaagtatg 39476120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 492
Target Start/End: Original strand, 28385218 - 28385255
Alignment:
Q  455 ttgtattgaaactattatgattaatgaaatgctataaa 492  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  28385218 ttgtattgaaactattattattaatgaaatgttataaa 28385255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 501
Target Start/End: Original strand, 47726367 - 47726416
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttct 501  Q
    |||||||||||||||| | || | |||||||||||||||||||| |||||    
T  47726367 caattgtattgaaactttgattactaatgaaatgctataaacacttttct 47726416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 501
Target Start/End: Original strand, 47747673 - 47747722
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttct 501  Q
    |||||||||||||||| | || | |||||||||||||||||||| |||||    
T  47747673 caattgtattgaaactttgattactaatgaaatgctataaacacttttct 47747722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 28706107 - 28706051
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||||||||||||||   ||||| | || ||||||||||||||||||    
T  28706107 gaaatgctgaaattagcaagccaatatacacttttgttgccttcacgccaagtatgg 28706051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 491
Target Start/End: Complemental strand, 38488904 - 38488868
Alignment:
Q  455 ttgtattgaaactattatgattaatgaaatgctataa 491  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  38488904 ttgtattgaaattattattattaatgaaatgctataa 38488868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 500
Target Start/End: Original strand, 49372422 - 49372470
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    |||||||||||||||| |||| || ||||||||||||||| || |||||    
T  49372422 caattgtattgaaactcttattatcaatgaaatgctataagcaagtttc 49372470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 44145927 - 44145824
Alignment:
Q  1 caaatgcttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 100  Q
    |||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145927 caaatgattcacagaaatgctaaaattagcaagtcaatcagcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 44145828  T
Q  101 agct 104  Q
    ||||    
T  44145827 agct 44145824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 38560594 - 38560697
Alignment:
Q  1 caaatgcttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 100  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  38560594 caaatgattcacaaaaatgctaaaattagcaagccaatcggcacttctatttccttcgtgccaagtatggttgatttgcacatgccaatccattctcagc 38560693  T
Q  101 agct 104  Q
    ||||    
T  38560694 agct 38560697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 452 - 500
Target Start/End: Original strand, 27978849 - 27978897
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  27978849 caattttattgaaactattatgattaatgaaatgttataaacacgtttc 27978897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 452 - 500
Target Start/End: Original strand, 28036118 - 28036166
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  28036118 caattttattgaaactattatgattaatgaaatgttataaacacgtttc 28036166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 1363022 - 1362962
Alignment:
Q  20 ctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgca 80  Q
    |||||||||||||||||||| |||||||||||||| ||  |||| |||||||||| |||||    
T  1363022 ctaaaattagcaagccaatcagcacttctatttccctcctgccaggtatggttgaattgca 1362962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 42000390 - 42000334
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||||||||||||||| |||||| | || ||||||||||||||||||    
T  42000390 gaaatgctgaaattagcaagccaatctgcacttttgttgccttcacgccaagtatgg 42000334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 45093556 - 45093500
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||| ||||||||||| |||||||| || ||||||||||||||||||    
T  45093556 gaaatgctgaaatttgcaagccaatctgcacttctgttgccttcacgccaagtatgg 45093500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 1636209 - 1636134
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||| | |||||||| |||||||| ||||| ||||||||||||||| |||||||| ||| ||| |||| ||||    
T  1636209 agaaatgattaaattagcgagccaatcagcactcctatttccttcacgctaagtatgggtgagttgaacattccaa 1636134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 26616714 - 26616789
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||||| |||||||  |||||||| | |||  ||||||||||||||||||||||||||| ||| |||| ||||    
T  26616714 agaaatgcttaaattagtgagccaatcagtactcatatttccttcacgccaagtatggttgagttgaacattccaa 26616789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 35808307 - 35808261
Alignment:
Q  24 aattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||||||||||| |||||||| || ||||||||||||||||||    
T  35808307 aattagcaagccaatctgcacttctgttgccttcacgccaagtatgg 35808261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 454 - 491
Target Start/End: Complemental strand, 13700170 - 13700133
Alignment:
Q  454 attgtattgaaactattatgattaatgaaatgctataa 491  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  13700170 attgtattgaaactattattattaatgaaatgctataa 13700133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 9031587 - 9031655
Alignment:
Q  16 aatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatg 84  Q
    ||||||||  || |||||||||||  |||||||||||||||||||  |||||||||| |||| ||||||    
T  9031587 aatgctaatgtttgcaagccaatcaacacttctatttccttcacgttaagtatggttaattttcacatg 9031655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 491
Target Start/End: Original strand, 22897968 - 22898004
Alignment:
Q  455 ttgtattgaaactattatgattaatgaaatgctataa 491  Q
    |||||||||||||||||| ||||||||||||||||||    
T  22897968 ttgtattgaaactattattattaatgaaatgctataa 22898004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 456348 - 456423
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||| | |||||||| |||||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||    
T  456348 agaaatgtttaaattagcgagccaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaa 456423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 487
Target Start/End: Complemental strand, 34723889 - 34723854
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgct 487  Q
    ||||||||||||| ||||||||||||||||||||||    
T  34723889 caattgtattgaatctattatgattaatgaaatgct 34723854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Complemental strand, 37590073 - 37590034
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataa 491  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  37590073 caattgtattgaaactcttattattaatgaaatgctataa 37590034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 33373313 - 33373257
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| |||||||||| |||||| |||||| | || ||||| ||||||||||||    
T  33373313 gaaatgctgaaattagcaatccaatctgcacttttgttgccttcccgccaagtatgg 33373257  T

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Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 17290252 - 17290149
Alignment:
Q  1 caaatgcttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagc 100  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17290252 caaatgattcacagaaatactaaaattagcaagccaatcggcacttctatttccttcacgccaaatatggttgatttgcacatgccaatccattctcagc 17290153  T
Q  101 agct 104  Q
    ||||    
T  17290152 agct 17290149  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 13187099 - 13187024
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||| |||| ||| |||| ||||    
T  13187099 agaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgattgagttgaacattccaa 13187024  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 7305068 - 7305129
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttga 74  Q
    ||||||||| |||||||  |||||||| ||||| ||||||||||||||||||||||||||||    
T  7305068 agaaatgcttaaattagagagccaatcagcactcctatttccttcacgccaagtatggttga 7305129  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 6599130 - 6599054
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaat 89  Q
    ||||||||| |||||||| |||||||| |||||  ||||||||||||||||| ||||||||| ||| |||| |||||    
T  6599130 agaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaattatggttgagttgaacattccaat 6599054  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 26381267 - 26381328
Alignment:
Q  26 ttagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgcca 87  Q
    ||||||||||||||   |||| |||||||||||| | |||||||||||||||||||||||||    
T  26381267 ttagcaagccaatcaaaacttttatttccttcacacgaagtatggttgatttgcacatgcca 26381328  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 40615032 - 40615087
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 69  Q
    |||||||| |||||||||| |||||| |||||||| || |||||||||||||||||    
T  40615032 gaaatgctgaaattagcaaaccaatctgcacttctgttaccttcacgccaagtatg 40615087  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 11995725 - 11995779
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtat 68  Q
    |||||||| ||||||||||| ||||| |||||||| || ||||||||||||||||    
T  11995725 gaaatgctgaaattagcaagacaatctgcacttctgttgccttcacgccaagtat 11995779  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 37307282 - 37307352
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacat 83  Q
    ||||||||| || ||| | |||||||| ||||| |||||||||||||| ||||||||||||| ||| ||||    
T  37307282 agaaatgcttaagttaacgagccaatcagcactcctatttccttcacgtcaagtatggttgagttgaacat 37307352  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 6372741 - 6372673
Alignment:
Q  20 ctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||||||| |||||||| ||   | | ||||||||||||||||||||||||||||| || ||||||    
T  6372741 ctaaaattagctagccaatcagccgatttgtttccttcacgccaagtatggttgatttgaacttgccaa 6372673  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 500
Target Start/End: Original strand, 23379972 - 23380020
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    ||||||||||||||||||||| |||||||||||| ||||| || |||||    
T  23379972 caattgtattgaaactattattattaatgaaatgttataagcatgtttc 23380020  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 42866032 - 42865976
Alignment:
Q  14 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 70  Q
    |||||||| ||||||||||||||||| |||||| | || ||||| ||||||||||||    
T  42866032 gaaatgctgaaattagcaagccaatctgcacttttgttgccttcccgccaagtatgg 42865976  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 40426155 - 40426230
Alignment:
Q  13 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 88  Q
    ||||||||| |||||||| || ||||| ||||| ||||||||||||| |||| ||||| ||| ||| |||| ||||    
T  40426155 agaaatgcttaaattagcgagtcaatcagcactcctatttccttcacaccaaatatgggtgagttgaacattccaa 40426230  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 23762542 - 23762494
Alignment:
Q  454 attgtattgaaactattatgattaatgaaatgctataaacacgtttctt 502  Q
    |||||||||||||| | || || |||||||||||||||||| |||||||    
T  23762542 attgtattgaaactctgattatcaatgaaatgctataaacatgtttctt 23762494  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 24467791 - 24467731
Alignment:
Q  21 taaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcac 81  Q
    ||||||||| |||||||||  ||||||||||||| || || ||| ||||||||| ||||||    
T  24467791 taaaattaggaagccaatcaacacttctatttccctcccgtcaaatatggttgaattgcac 24467731  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1222956 - 1223019
Alignment:
Q  1 caaatgcttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 64  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1222956 caaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 1223019  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 491
Target Start/End: Original strand, 9959331 - 9959370
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataa 491  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  9959331 caattgtattgagactattatgattaatgaaatgctataa 9959370  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Original strand, 31029232 - 31029271
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataa 491  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  31029232 caattgtattgagactattatgatcaatgaaatgctataa 31029271  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 34355780 - 34355731
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttct 501  Q
    |||||||||||||||| |||| || ||||||||||||||| || ||||||    
T  34355780 caattgtattgaaactcttattatcaatgaaatgctataagcatgtttct 34355731  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 491
Target Start/End: Original strand, 6695686 - 6695722
Alignment:
Q  455 ttgtattgaaactattatgattaatgaaatgctataa 491  Q
    |||||||||||||||||| |||||||||||| |||||    
T  6695686 ttgtattgaaactattatcattaatgaaatgttataa 6695722  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 500
Target Start/End: Complemental strand, 30140974 - 30140926
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    |||||||||||||||| | || |||||||||||||||||| ||| ||||    
T  30140974 caattgtattgaaactttgattattaatgaaatgctataagcacttttc 30140926  T

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Target: scaffold0789 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 4249 - 4204
Alignment:
Q  455 ttgtattgaaactattatgattaatgaaatgctataaacacgtttc 500  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||    
T  4249 ttgtattgaaactattattatcaatgaaatgctataagcacgtttc 4204  T

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Target: scaffold0040 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Complemental strand, 62524 - 62485
Alignment:
Q  452 caattgtattgaaactattatgattaatgaaatgctataa 491  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  62524 caattgtattgaaactcttattattaatgaaatgctataa 62485  T

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Target: scaffold0736 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0736
Description:

Target: scaffold0736; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 6589 - 6520
Alignment:
Q  20 ctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaat 89  Q
    ||||| ||||| | |||||||||   |||||| |||||||||||||||||||| ||||  ||||||||||    
T  6589 ctaaagttagctaaccaatcggctgctctattgccttcacgccaagtatggttaatttaaacatgccaat 6520  T

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