View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14589_high_5 (Length: 440)
Name: NF14589_high_5
Description: NF14589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14589_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 2846199 - 2846615
Alignment:
| Q |
18 |
acatgaagtaactactcaagcacaaaagtggctactgaatccagaaagtggtgtctttcttcatgagtacactagcaatttaaatgcaagctaggctaat |
117 |
Q |
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| T |
2846199 |
acatgaagtaactactcaagcacaaaagtggctactgaatccagaaagtggtgtctttctccatgaggacactagcaatttatatgcaagctaggctaat |
2846298 |
T |
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| Q |
118 |
caaatgtggacgatgtataagattttgttccattttgtatgtgttgcttacaatggccctgctgctaataacaaccttcacgttttcaatattattcaca |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2846299 |
caaatgtggaggatgtataagattttgttccattttgtacgtgttgcttacaat--ccctgctgctaataacaaccttcacgttttgaatattattcaca |
2846396 |
T |
|
| Q |
218 |
aaaaactctcttattcaattttaaaagatcataattgactccgaaagtagtgagtaatggagaaggaataaatcatatattactaaatagcaatttaaaa |
317 |
Q |
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| T |
2846397 |
aaaaactctcttattcaattttaaaagatcataattgactccgaaagtagtgagtaatggagaaggaataaatcatatattactaaatagcaatttaaaa |
2846496 |
T |
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| Q |
318 |
ataaataaattcatttcttcgtcaaatattttcacaaatgtacaccaaactataaaattaaatgactagtgatgtatccttag-nnnnnnngttagaaat |
416 |
Q |
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| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
2846497 |
a-aaaaaaattcatttcttcgtcaaatattttcacaaatgtacaccaaactataaaattaaatgacgagtgatgtatccttagttttttttgttagaaat |
2846595 |
T |
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| Q |
417 |
taaattagtcgtacagaatt |
436 |
Q |
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| T |
2846596 |
taaattagtcgtacagaatt |
2846615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 26494016 - 26493964
Alignment:
| Q |
58 |
ccagaaagtggtgtctttcttcatgagtacactagcaatttaaatgcaagcta |
110 |
Q |
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||||| |||||| ||||||| | |||||||||||||||| || |||||||||| |
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| T |
26494016 |
ccagacagtggtatctttctccctgagtacactagcaatgtatatgcaagcta |
26493964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 19080975 - 19080923
Alignment:
| Q |
58 |
ccagaaagtggtgtctttcttcatgagtacactagcaatttaaatgcaagcta |
110 |
Q |
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||||| |||||| ||||||| | |||||||||||||||| || |||||||||| |
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| T |
19080975 |
ccagacagtggtatctttctccctgagtacactagcaatgtatatgcaagcta |
19080923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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