View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14589_high_9 (Length: 315)
Name: NF14589_high_9
Description: NF14589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14589_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 39527013 - 39527305
Alignment:
| Q |
5 |
ctcaccttttttcaacacgatcagttttgtttccaaccaaaacgataataacatcactgcctcgttctgcacgtacctcctcaacccacttgttagtgtt |
104 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39527013 |
ctcaccttttttcaacaagatcagttttgtttccaaccaaaacgataataacatcactgcctcgttctgcacgtacctcctcaacccacttgttagtgtt |
39527112 |
T |
|
| Q |
105 |
aagaaatgattgccgatctgcatcagaacagcttgctaagaaatttaatggttataatttgatttatgccgcatagtttgatatnnnnnnnctaagcaaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39527113 |
aagaaatgattgccgatctgcatcagaacagcttgctaagaaatttaatggttataatttgatttatgccgcatagtttgatattaaaaaactaagcaaa |
39527212 |
T |
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| Q |
205 |
ctaattccacaagcaaacagagcatagtgtacaatagaaaacacaaagagaggtagggactggggagctaactttttcaatcattcagtgcttct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39527213 |
ctaattccacaagcaaacagagcatagtgtacaatagaaaacac--agagaggtagggactggggagctaactttttcaatcattcagtgcttct |
39527305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 37852879 - 37852992
Alignment:
| Q |
5 |
ctcaccttttttcaacacgatcagttttgtttccaaccaaaacgataataacatcactgcctcgttctgcacgtacctcctcaacccacttgttagtgtt |
104 |
Q |
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|||||||||| || ||| |||||||||||||||||||||| || || ||||||||||| || |||||| ||| |||||||||||||||||||||||||| |
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| T |
37852879 |
ctcaccttttctcgacaagatcagttttgtttccaaccaagacaattataacatcactaccacgttcttgacgcacctcctcaacccacttgttagtgtt |
37852978 |
T |
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| Q |
105 |
aagaaatgattgcc |
118 |
Q |
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||||||||||||| |
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| T |
37852979 |
cagaaatgattgcc |
37852992 |
T |
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