View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14589_low_10 (Length: 339)
Name: NF14589_low_10
Description: NF14589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14589_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 40553121 - 40553443
Alignment:
| Q |
1 |
ccatatattgagaagaagaataatgatcaaatgtggttgatgcggactcaatagcaattagagtcgctgagacatcaaaaaccttgatattgcaatatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40553121 |
ccatatattgagaagaagaataatgatcaaatgtggttgatgcggactcaatagcaattaaagtcgctgagacatcaaaaaccttgatattgcaatatga |
40553220 |
T |
|
| Q |
101 |
attgttgtcgcagaccttttctnnnnnnnnnnnnnnnnnngctacattttattttgtacttcacccttgacaggtggttaattcagatccaaatacatat |
200 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40553221 |
attgttgtcgcagaccttttctaaaaataaaaaataaaaagctacattttaatttgtacttcacccttgacaggtggttaattcagatccaaatacatat |
40553320 |
T |
|
| Q |
201 |
gtttgtcatggatgcctttctgttatttacaagatagttcattttagccaatctgataagcttgtagaactgctcgagaacaccaacatttcaaggtgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40553321 |
gtttgtcatggatgcctttctgttatttacaagatagttcattttagccaatctgataagcttgtagaactgctcgagaacaccaacatttcaaggtgaa |
40553420 |
T |
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| Q |
301 |
tcatgcatccttttctggttcat |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
40553421 |
tcatgcatccttttctggttcat |
40553443 |
T |
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