View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14589_low_16 (Length: 262)
Name: NF14589_low_16
Description: NF14589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14589_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 31422965 - 31423208
Alignment:
| Q |
1 |
gatttaggtaaggcgagtaatagaaagcttcaaacatgtttacctctaccgagaaaggatttaggtaaggcgggtaacataaagcttcaaacatattatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31422965 |
gatttaggtaaggcgagtaatagaaagcttcaaacatgtttacctctaccgagaaaggatttaggtaaggcgggtaacataaagcttcaaacatattatt |
31423064 |
T |
|
| Q |
101 |
aactactaaggatttacacctaacataattcaaagactatgaatacaatatgtctacc-tacttctaatctacacggtgcattcagcttattcttatagg |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31423065 |
aactactaaggatttacacctaacataattcaaagactatgaatacaatatgtctaccttacttcttatctacacggtgcattcagcttattcttatagg |
31423164 |
T |
|
| Q |
200 |
tagatgtggagacttcactcgactcaaatctacacggtgcattc |
243 |
Q |
| |
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| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31423165 |
tgggtgtggagacttcactcgactcaaatctacacggtgcattc |
31423208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 196
Target Start/End: Original strand, 31423191 - 31423221
Alignment:
| Q |
166 |
aatctacacggtgcattcagcttattcttat |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
31423191 |
aatctacacggtgcattcagcttattcttat |
31423221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 27892001 - 27891953
Alignment:
| Q |
195 |
ataggtagatgtggagacttcactcgactcaaatctacacggtgcattc |
243 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27892001 |
ataggtgggtgtggagacttcactcgactcaaatctacacggtgcattc |
27891953 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 195
Target Start/End: Complemental strand, 27891970 - 27891941
Alignment:
| Q |
166 |
aatctacacggtgcattcagcttattctta |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
27891970 |
aatctacacggtgcattcagcttattctta |
27891941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 48547857 - 48547809
Alignment:
| Q |
195 |
ataggtagatgtggagacttcactcgactcaaatctacacggtgcattc |
243 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48547857 |
ataggtgggtgtggagacttcactcgactcaaatctacacggtgcattc |
48547809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 196
Target Start/End: Complemental strand, 48547826 - 48547796
Alignment:
| Q |
166 |
aatctacacggtgcattcagcttattcttat |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
48547826 |
aatctacacggtgcattcagcttattcttat |
48547796 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 28604806 - 28604854
Alignment:
| Q |
195 |
ataggtagatgtggagacttcactcgactcaaatctacacggtgcattc |
243 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
28604806 |
ataggtgggtgtggagacttcactcgtctcaaatctacacggtgcattc |
28604854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 196
Target Start/End: Original strand, 28604837 - 28604867
Alignment:
| Q |
166 |
aatctacacggtgcattcagcttattcttat |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
28604837 |
aatctacacggtgcattcagcttattcttat |
28604867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 3621805 - 3621757
Alignment:
| Q |
195 |
ataggtagatgtggagacttcactcgactcaaatctacacggtgcattc |
243 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
3621805 |
ataggtgggtgtggagacttcactcgtctcaaatctacacggtgcattc |
3621757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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