View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14589_low_17 (Length: 244)
Name: NF14589_low_17
Description: NF14589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14589_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 1390742 - 1390959
Alignment:
| Q |
19 |
gaaatgtctccagtgtttcttccgtgtttgctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctca |
118 |
Q |
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| T |
1390742 |
gaaatgtctccagtgtttcttccgtgtttgctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctca |
1390841 |
T |
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| Q |
119 |
aattagtattctctattctttttatatcgtaaatttgattgtttcttaatcttaactgtggagcaagtagtctatgaggttatgtaatcttaaagtgcta |
218 |
Q |
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| T |
1390842 |
aattagtattatctattctttttatatcgtaaatttgtttgtttcttaatcttaactgtggagcaagtagtctatgaggttatgtaatcttaaagtgcta |
1390941 |
T |
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| Q |
219 |
aactgcacctatgcttct |
236 |
Q |
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| T |
1390942 |
aactgcacctatgcttct |
1390959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 1374478 - 1374572
Alignment:
| Q |
49 |
ctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctcaaattagtattctctattctttttat |
143 |
Q |
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| T |
1374478 |
ctttcggattttaaaatgcaaatggatggataagagttgataaatgaaatggcacttctattgattctcaaattaatattatctattgtttttat |
1374572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 1358869 - 1358946
Alignment:
| Q |
48 |
gctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctcaaattagta |
126 |
Q |
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| T |
1358869 |
gctttcggatttc-aaatgcaaatgtatggataagagttaataaatgaaatggtacttttattcattctgaaattagta |
1358946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 1350995 - 1351072
Alignment:
| Q |
48 |
gctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctcaaattagta |
126 |
Q |
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| T |
1350995 |
gctttcggatttcaaaatgcaaatgtatggataagagttaataaatgaaatggtaccttt-ttcattctcaagttagta |
1351072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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