View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14589_low_19 (Length: 236)

Name: NF14589_low_19
Description: NF14589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14589_low_19
NF14589_low_19
[»] chr2 (3 HSPs)
chr2 (1-221)||(30076261-30076481)
chr2 (52-221)||(5890499-5890668)
chr2 (4-186)||(17303056-17303237)
[»] chr4 (3 HSPs)
chr4 (1-221)||(29096197-29096417)
chr4 (1-221)||(26494498-26494733)
chr4 (1-221)||(37986971-37987183)
[»] chr5 (3 HSPs)
chr5 (1-220)||(28866210-28866429)
chr5 (4-100)||(15974034-15974131)
chr5 (192-221)||(18768266-18768295)
[»] chr6 (1 HSPs)
chr6 (40-221)||(20613003-20613185)
[»] chr3 (1 HSPs)
chr3 (9-220)||(1829449-1829638)
[»] scaffold0060 (2 HSPs)
scaffold0060 (112-221)||(35843-35952)
scaffold0060 (1-82)||(35757-35841)
[»] chr8 (2 HSPs)
chr8 (126-220)||(33011860-33011954)
chr8 (39-100)||(33011970-33012031)
[»] chr1 (1 HSPs)
chr1 (32-88)||(10370904-10370960)


Alignment Details
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30076481 - 30076261
Alignment:
Q  1 tgcagtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttcttttttcatgttttatcttttacttttaaaaattgtatt 100  Q
    |||||||||||||||||||| |  ||||||||||| |  ||||||||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||    
T  30076481 tgcagtggtaaggggtgccatgatttgggaaaggttgcaggttcaacactgcctagtcctctttttacaagttttatcttttacttttaaaaaatgtatt 30076382  T
Q  101 nnnnnnnncaattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttattgttagtttttaaaa 200  Q
            |||||||||||||  || ||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  30076381 aaaagaaacaattttgatgggattcaaacccacaatctcttgatgctttcaaaggatttatgccactagattaactatcatttattgttaatttttaaaa 30076282  T
Q  201 ctgtttaatatatattccatg 221  Q
    |||||||||||||||||||||    
T  30076281 ctgtttaatatatattccatg 30076261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 52 - 221
Target Start/End: Original strand, 5890499 - 5890668
Alignment:
Q  52 cctagtcttcttttttcatgttttatcttttacttttaaaaattgtattnnnnnnnncaattttgatgggtctcgaacccacaatctcatgatgttttca 151  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||||        ||| |||||||||  | |||||||||||||  ||||| ||  |    
T  5890499 cctagtcttctatttacatattttatcttttacttttaaaaattgtattaaaaaaaccaactttgatgggatttgaacccacaatcttttgatgcttata 5890598  T
Q  152 aaggatttatgccactagattagctatcatttattgttagtttttaaaactgtttaatatatattccatg 221  Q
    ||||||||||||||||||||||| ||| |||||||||||||| ||||||||| |||||||||||||||||    
T  5890599 aaggatttatgccactagattagttattatttattgttagttcttaaaactggttaatatatattccatg 5890668  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 17303237 - 17303056
Alignment:
Q  4 agtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttcttttttcatgttttatcttttacttttaaaaattgtattnnn 103  Q
    ||||||||| |||||||   |||||||||||| | ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||       
T  17303237 agtggtaagaggtgccataaattgggaaaggttgcgggttaaacagtgcctagtcttctttttacatgttttatcttttacttttaaaaattatatt-aa 17303139  T
Q  104 nnnnncaattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttatt 186  Q
         |||||||||||||  | |||||||||||||| ||| | ||||||| ||||||||||| |||||||  ||| |||||||    
T  17303138 aaaaacaattttgatgggatttgaacccacaatctcttgaagctttcaaaagatttatgccattagattaattattatttatt 17303056  T

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Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29096197 - 29096417
Alignment:
Q  1 tgcagtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttcttttttcatgttttatcttttacttttaaaaattgtatt 100  Q
    |||||||||||||||||||| | | |||||||||||| ||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||||||||    
T  29096197 tgcagtggtaaggggtgccatgaactgggaaaggtcgcgggttcaacactgcctaattttcattttacatgttttatcttttacttttaaaaattgtatt 29096296  T
Q  101 nnnnnnnncaattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttattgttagtttttaaaa 200  Q
            || |||||||| |  | |||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  29096297 aaaaaaaacagttttgatgagatttgaacccacaatctcttgatgctttcaaaggatttatgctactagattagttatcatttattgttagtatttaaaa 29096396  T
Q  201 ctgtttaatatatattccatg 221  Q
    |||||||||||||||||||||    
T  29096397 ctgtttaatatatattccatg 29096417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26494498 - 26494733
Alignment:
Q  1 tgcagtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttctttttt---------------catgttttatcttttact 85  Q
    |||||||||||||||||||| | | |||||||||| || ||||||||||||||||||||| ||||||               ||||||||||||||||||    
T  26494498 tgcagtggtaaggggtgccatgaactgggaaaggttgtaggttcaacactgcctagtcttattttttatttttttttttcttcatgttttatcttttact 26494597  T
Q  86 tttaaaaattgtattnnnnnnnncaattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttat 185  Q
    |||||||||||||||        || ||||||||||  |||||||||||||||| |||||  ||||||||||||||||||||||||||| ||||||||||    
T  26494598 tttaaaaattgtattaaaaaaaacagttttgatgggattcgaacccacaatctcttgatgcattcaaaggatttatgccactagattagttatcatttat 26494697  T
Q  186 tgttagtttttaaaactgtttaatatatattccatg 221  Q
    |||||||| |||||||||||||||||||||||||||    
T  26494698 tgttagttcttaaaactgtttaatatatattccatg 26494733  T

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Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37987183 - 37986971
Alignment:
Q  1 tgcagtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttcttttttcatgttttatcttttacttttaaaaattgtatt 100  Q
    |||||||||||||||||||| | |||||||||||| |  ||||||| |||| |||||||||||||| |||       |||||||||||||||||||||||    
T  37987183 tgcagtggtaaggggtgccatgaattgggaaaggttgcaggttcaatactgtctagtcttctttttacat-------cttttacttttaaaaattgtatt 37987091  T
Q  101 nnnnnnnncaattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttattgttagtttttaaaa 200  Q
            ||||| |||||||  || ||||||||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  37987090 taaaaaa-caattctgatgggattcaaacccacaatctcttgatgctttcaaaggatttatgccgctagattagttatcatttattgttagtttttaaaa 37986992  T
Q  201 ctgtttaatatatattccatg 221  Q
    |||||||||||||||||||||    
T  37986991 ctgtttaatatatattccatg 37986971  T

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Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28866429 - 28866210
Alignment:
Q  1 tgcagtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttcttttttcatgttttatcttttacttttaaaaattgtatt 100  Q
    |||||||||||||||||||| | |  ||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  28866429 tgcagtggtaaggggtgccatgaacagggaaaggttgtgggttcaacactgcctaatcttctttttacatgttttatcttttacttttaaaaattgtatt 28866330  T
Q  101 nnnnnnnncaattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttattgttagtttttaaaa 200  Q
            || |||||||||   ||| |||||||||||| ||||| |||||||| || |||||||||||||| | |||||||||||| ||||||||||||    
T  28866329 aaaaaaaacagttttgatggaattcggacccacaatctcttgatgctttcaaagtatatatgccactagatttgttatcatttattgatagtttttaaaa 28866230  T
Q  201 ctgtttaatatatattccat 220  Q
    ||||||||||||||||||||    
T  28866229 ctgtttaatatatattccat 28866210  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 15974131 - 15974034
Alignment:
Q  4 agtggtaaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttctttttt-catgttttatcttttacttttaaaaattgtatt 100  Q
    ||||||||||| ||||| | | |||||||||||| || ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  15974131 agtggtaagggatgccatgaactgggaaaggtcgcggtttcaacactgcctagtctttttttttacatgttttatcttttacttttaaaaattgtatt 15974034  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 18768295 - 18768266
Alignment:
Q  192 tttttaaaactgtttaatatatattccatg 221  Q
    ||||||||||||||||||||||||||||||    
T  18768295 tttttaaaactgtttaatatatattccatg 18768266  T

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Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 40 - 221
Target Start/End: Complemental strand, 20613185 - 20613003
Alignment:
Q  40 ggttcaacactgcctagtcttctttttt-catgttttatcttttacttttaaaaattgtattnnnnnnnncaattttgatgggtctcgaacccacaatct 138  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||        ||||||| |||||  | |||||||||||||    
T  20613185 ggttcaacactgcctagtcttctttttaacatgttttattttttacttttaaaaattgtattaaaataaacaattttaatgggatttgaacccacaatct 20613086  T
Q  139 catgatgttttcaaaggatttatgccactagattagctatcatttattgttagtttttaaaactgtttaatatatattccatg 221  Q
    | ||||| |||||||||||||||| ||||||||||| ||| ||||||| |||||| |||||||||||||||||||||||||||    
T  20613085 cttgatgctttcaaaggatttatgtcactagattagttattatttatttttagttattaaaactgtttaatatatattccatg 20613003  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 1829449 - 1829638
Alignment:
Q  9 taaggggtgccaggtattgggaaaggtcgtgggttcaacactgcctagtcttcttttttcatgttttatcttttacttttaaaaattgtattnnnnnnnn 108  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||                   
T  1829449 taaggggtgccataaattgggaaaggtcgtgggttcaacactgcctagtcttctttttacatgttttattttttacttttaaaaa------------aaa 1829536  T
Q  109 caattttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttattgttagtttttaaaactgtttaa 208  Q
    |||||||||||||  |||||||||||||||| ||||| |||||||| |||||||||           ||| |||||||||||||| |||||||||||| |    
T  1829537 caattttgatgggattcgaacccacaatctcttgatgctttcaaagaatttatgcc----------ttattatttattgttagttcttaaaactgtttga 1829626  T

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Target: scaffold0060 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 35843 - 35952
Alignment:
Q  112 ttttgatgggtctcgaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttattgttagtttttaaaactgtttaatat 211  Q
    ||||||||||  || ||||||||||| | ||||| ||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||    
T  35843 ttttgatggggttcaaacccacaatcgcttgatgctttcaaaggatttatgccactagattagtcattatttattgttagtttttaaaactgtttaatat 35942  T
Q  212 atattccatg 221  Q
    ||||| ||||    
T  35943 atatttcatg 35952  T

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Target: scaffold0060; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 35757 - 35841
Alignment:
Q  1 tgcagtggtaaggggtgccaggtattgggaaaggt--cgtgggttcaacactgcctagtcttcttttt-tcatgttttatctttt 82  Q
    |||||||||||||||||||| | ||||||||||||   |||||||||||||| |||||||||||||||  |||||||||||||||    
T  35757 tgcagtggtaaggggtgccatgaattgggaaaggttgtgtgggttcaacacttcctagtcttctttttaacatgttttatctttt 35841  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 33011954 - 33011860
Alignment:
Q  126 gaacccacaatctcatgatgttttcaaaggatttatgccactagattagctatcatttattgttagtttttaaaactgtttaatatatattccat 220  Q
    |||||||||||||| ||  | |||||||| |||||||||| |||| ||| ||| |||| |||||| || ||||||||||||||||||||||||||    
T  33011954 gaacccacaatctcttgtggctttcaaagaatttatgccattagactagttattatttgttgttatttcttaaaactgtttaatatatattccat 33011860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 33012031 - 33011970
Alignment:
Q  39 gggttcaacactgcctagtcttcttttttcatgttttatcttttacttttaaaaattgtatt 100  Q
    |||||||||||| |||| | || ||||| ||| |||||||||||| ||||| ||||||||||    
T  33012031 gggttcaacactacctaatgttttttttacatattttatcttttaattttacaaattgtatt 33011970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 10370904 - 10370960
Alignment:
Q  32 aggtcgtgggttcaacactgcctagtcttcttttttcatgttttatcttttactttt 88  Q
    ||||||| ||||||||||  ||| ||||||||||| ||| ||| |||||||||||||    
T  10370904 aggtcgtcggttcaacacctcctcgtcttctttttacatatttaatcttttactttt 10370960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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