View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14589_low_20 (Length: 230)
Name: NF14589_low_20
Description: NF14589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14589_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 38729874 - 38729995
Alignment:
| Q |
1 |
tctgaaccctgcgaatttcatctcgtcccagagcctcaatgcagtttctaagtttccagatttgacataagattcaattaaagaaacgtatatagtaggg |
100 |
Q |
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| T |
38729874 |
tctgaaccctgctaatttcatctcgtcccaaagcctcaaagcagtttctaactttccagatttgacataagattcaatcaaagaaacatatatagtaggg |
38729973 |
T |
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| Q |
101 |
ggaggcctgtacccataacctc |
122 |
Q |
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| T |
38729974 |
ggaggcctgtacccataacctc |
38729995 |
T |
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Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 385675 - 385578
Alignment:
| Q |
32 |
agcctcaatgcagtttctaagtttccagatttgacataagattcaattaaagaaacgtatatagtagggggaggcctgtacccataacctcaaggaaa |
129 |
Q |
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| T |
385675 |
agcctcaaagcagtttctaactttccagatttgacataagattcaatcaaagaaacgtatatagtagggggaggcctgtacccataacctcaaggaaa |
385578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 385537 - 385460
Alignment:
| Q |
153 |
actatacagaatagaatgcctcggtaattatttttgtttgaaaaacatggtggcactgagagggttataggcgtaatt |
230 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
385537 |
actatacagaatagaatgcctaggtaattatttttgtttgaaaaacctggtggcactgagagggttataagcgtaatt |
385460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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