View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14589_low_3 (Length: 521)
Name: NF14589_low_3
Description: NF14589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14589_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 11 - 504
Target Start/End: Original strand, 24990922 - 24991415
Alignment:
| Q |
11 |
ttactagttaaaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaa |
110 |
Q |
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| T |
24990922 |
ttactagttaaaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaa |
24991021 |
T |
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| Q |
111 |
gttgcttcccatccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgcc |
210 |
Q |
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| T |
24991022 |
gttgcttcccatccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgcc |
24991121 |
T |
|
| Q |
211 |
acagaatgcatgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcgttttaatgtgcaaataattatattcttctattatttt |
310 |
Q |
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| T |
24991122 |
acagaatgcatgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcattttaatgtgcaaataattatattcttctattatttt |
24991221 |
T |
|
| Q |
311 |
taggtgataaagctggataatttcatcactcacgagcttccctttgacgagataaaccaagccttcgatcttttgattgccgggaagtcattgagatgtg |
410 |
Q |
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| T |
24991222 |
taggcgataaagttggataatttcatcactcacgagcttccctttgatgagataaaccaagccttcaatcttttgattgccgggaagtcattgagatgtg |
24991321 |
T |
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| Q |
411 |
ttctaacactctaagagaagacatacnnnnnnnncttcattcagatagagagcactctccagttttatgatatctgagttcttgattagaagta |
504 |
Q |
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| T |
24991322 |
ttcttacactctaagagaagacatacttttttttcttcattcagatagagagcactctccagttttatgatatctgagttcttgattagaagta |
24991415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 21 - 504
Target Start/End: Original strand, 24994607 - 24995079
Alignment:
| Q |
21 |
aaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaagttgcttccc |
120 |
Q |
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|||| ||||||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |
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| T |
24994607 |
aaaactgtgcactatcaaattttatgtctaatt--gtataatgtagggttggggattgactatactattgggaattcatgcatcaccaaagttacttcct |
24994704 |
T |
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| Q |
121 |
atccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgccacagaatgca |
220 |
Q |
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| T |
24994705 |
ctccacccaatggagctctttgatggccgcaaaatcgaaggatcggtctttggaggtttcaaaggcaaaagtcaattgcctaatcttgccacagaatgca |
24994804 |
T |
|
| Q |
221 |
tgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcgttttaatgtgcaaataattatattcttctattatttttaggtgataa |
320 |
Q |
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| T |
24994805 |
tgaaaggggtaa-tgatcatcacta---gcaaaaactcaaattatgcgatgcgttttagtgtccaagtaattatattcttctattatttttaggcgataa |
24994900 |
T |
|
| Q |
321 |
agctggataatttcatcactcacgagcttccctttgacgagataaaccaagccttcgatcttttgattgccgggaagtcattgagatgtgttctaacact |
420 |
Q |
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|| ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||| |
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| T |
24994901 |
agttggatgatttcatcactcacgaacttccctttgacgagataaacaaagccttcgatcttttgattgccgggaagtcactgagatgtcttctgacact |
24995000 |
T |
|
| Q |
421 |
ctaagagaagacatacnnnnnnnncttcattcagatagagagcactctccagttttatgatatctgagttcttgattagaagta |
504 |
Q |
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|||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||| ||||| | |||||||| |
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| T |
24995001 |
ctaagagaagac-----gctgctttttcatttagatagagagcactctcaagtattatgatatctgaattctttactagaagta |
24995079 |
T |
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