View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14589_low_5 (Length: 474)

Name: NF14589_low_5
Description: NF14589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14589_low_5
NF14589_low_5
[»] chr5 (2 HSPs)
chr5 (32-463)||(27102756-27103187)
chr5 (19-463)||(27096458-27096884)
[»] chr4 (9 HSPs)
chr4 (280-436)||(37187653-37187815)
chr4 (280-461)||(37189722-37189909)
chr4 (280-449)||(37179957-37180132)
chr4 (280-436)||(37181605-37181767)
chr4 (88-174)||(37180166-37180252)
chr4 (88-174)||(37189602-37189688)
chr4 (86-174)||(37181483-37181571)
chr4 (71-173)||(37187850-37187949)
chr4 (332-364)||(38704157-38704189)


Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 32 - 463
Target Start/End: Original strand, 27102756 - 27103187
Alignment:
Q  32 aagtcatggcctcaatgaaaacattcatcacttcattatttctttttgttaccttgtcaaacatgggcatagaagctcgcaaccttttgcaaacaaccac 131  Q
    ||||||||||||||||||||||  |||| || || ||| ||||||||||||||||||||||||||  | |||||||||||||||||||||||||||| ||    
T  27102756 aagtcatggcctcaatgaaaaccatcattacatctttacttctttttgttaccttgtcaaacatgaacctagaagctcgcaaccttttgcaaacaactac 27102855  T
Q  132 acaacccaatttgccaagcattcccactttgccaaatccaacattgccttcaattccaacaacattgccaccattgccttctattccaacgttgccttca 231  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27102856 acaacccaatttgccaagcattcccactttaccaaaaccaacattgccttcaattccaacaacattgccaccattgccttctattccaacgttgccttca 27102955  T
Q  232 gtcccaacaacattgccacctttgccttcaatgccaacattgcctcaacctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctca 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  27102956 gtcccaacaacattgccacctttgccttcaatgccaacattgcctcaacctcaaggtaatgttcctccattgcctaccatcccttcagtgcctaagctca 27103055  T
Q  332 ctatgccaccacttcctagcattcctaccaatccacaacttccatcactcaactttccaccattgccatccaattcacttcccaacattccttcaatctc 431  Q
    ||||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  27103056 ctatgccaccacttcctagcattccaaccaatccaacacttccatctctcaactttccaccatttccatccaattcacttcccaaccttccttcaatctc 27103155  T
Q  432 aaccattatctcctccatccctttcttctctc 463  Q
    ||||||||||||||||||||||||||||||||    
T  27103156 aaccattatctcctccatccctttcttctctc 27103187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 27096458 - 27096884
Alignment:
Q  19 ctatcaattcatcaagtcatggcctcaatgaaaacattcatcacttcattatttctttttgttaccttgtcaaacatgggcatagaagctcgcaaccttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| |||||||||||||| || |||||||||| |||||||    
T  27096458 ctatcaattcatcaagtcatggcctcaatgaaaacattcatcacatctttatttcttttcgttgccttgtcaaacatgagcctagaagctcgaaaccttt 27096557  T
Q  119 tgcaaacaaccacacaacccaatttgccaagcattcccactttgccaaatccaacattgccttcaattccaacaacattgccaccattgccttctattcc 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||       
T  27096558 tgcaaacaaccacacaacccaatttgccaaacattcccactttgccaaatccaacattgccttcaattccaacaacattgccacctttgccctcaat--- 27096654  T
Q  219 aacgttgccttcagtcccaacaacattgccacctttgccttcaatgccaacattgcctcaacctcaaggtaatgttcctccattgcctactatcccttct 318  Q
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27096655 ---------------cccaacaacattgccacctttgccttcaatgccaacattgcctcaacctcaaggtaatgttcctccattgcctactatcccttct 27096739  T
Q  319 atgcctaagctcactatgccaccacttcctagcattcctaccaatccacaacttccatcactcaactttccaccattgccatccaattcacttcccaaca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  27096740 atgcctaagctcactatgccaccacttcctagcattcctaccaatccaacacttccatctctcaactttccaccatttccatccaattcacttcccaaca 27096839  T
Q  419 ttccttcaatctcaaccattatctcctccatccctttcttctctc 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27096840 ttccttcaatctcaaccattatctcctccatccctttcttctctc 27096884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 280 - 436
Target Start/End: Complemental strand, 37187815 - 37187653
Alignment:
Q  280 cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccacaacttccat 376  Q
    ||||| || ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||   ||||  | ||||||    
T  37187815 cctcagggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaaattttccaacaattccat 37187716  T
Q  377 cactcaactttccaccattgc---catccaattcacttcccaacattccttcaatctcaacca 436  Q
    | |||||| ||||||||||||   || ||| ||||||||||||||||||||||||| ||||||    
T  37187715 ctctcaacattccaccattgccagcagccacttcacttcccaacattccttcaatcccaacca 37187653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 37189722 - 37189909
Alignment:
Q  280 cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccacaacttccat 376  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||| ||   ||||  | ||||||    
T  37189722 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat 37189821  T
Q  377 cactcaactttccaccattgccatc---caattcacttcccaacattccttcaatctcaaccattatctcctccatccctttcttctc 461  Q
    | |||||| |||||||||||||| |   || ||||||||| ||| ||||||||||| |||||| | || |||||||||| || |||||    
T  37189822 ctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctccatcccatttttctc 37189909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 280 - 449
Target Start/End: Complemental strand, 37180132 - 37179957
Alignment:
Q  280 cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccacaacttccat 376  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||| ||   ||||  | ||||||    
T  37180132 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat 37180033  T
Q  377 cactcaactttccaccattgccatc---caattcacttcccaacattccttcaatctcaaccattatctcctccat 449  Q
    | |||||| |||||||||||||| |   || ||||||||| ||| ||||||||||| |||||| | || |||||||    
T  37180032 ctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctccat 37179957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 280 - 436
Target Start/End: Original strand, 37181605 - 37181767
Alignment:
Q  280 cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccacaacttccat 376  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||| ||   ||||  | ||||||    
T  37181605 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat 37181704  T
Q  377 cactcaactttccaccattgccatc---caattcacttcccaacattccttcaatctcaacca 436  Q
    | |||||| |||||||||||||| |   || ||||||||| ||| ||||||||||| ||||||    
T  37181705 ctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaacca 37181767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 37180252 - 37180166
Alignment:
Q  88 tcaaacatgggcatagaagctcgcaaccttttgcaaacaaccacacaacccaatttgccaagcattcccactttgccaaatccaaca 174  Q
    ||||||||| || ||||||||||| | ||||||||||| ||||||||||| ||||| |||| |||||||||||| ||||| ||||||    
T  37180252 tcaaacatgagcctagaagctcgccatcttttgcaaactaccacacaaccaaatttaccaaccattcccactttaccaaaaccaaca 37180166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 37189602 - 37189688
Alignment:
Q  88 tcaaacatgggcatagaagctcgcaaccttttgcaaacaaccacacaacccaatttgccaagcattcccactttgccaaatccaaca 174  Q
    ||||||||| || ||||||||||| | ||||||||||| ||||||||||| ||||| |||| |||||||||||| ||||| ||||||    
T  37189602 tcaaacatgagcctagaagctcgccatcttttgcaaactaccacacaaccaaatttaccaaccattcccactttaccaaaaccaaca 37189688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 37181483 - 37181571
Alignment:
Q  86 tgtcaaacatgggcatagaagctcgcaaccttttgcaaacaaccacacaacccaatttgccaagcattcccactttgccaaatccaaca 174  Q
    |||||| |||| || ||||||||||| | ||||||||||| ||||||||||| ||||| |||  |||||||||||| ||||| ||||||    
T  37181483 tgtcaagcatgagcctagaagctcgccatcttttgcaaactaccacacaaccaaatttaccagccattcccactttaccaaaaccaaca 37181571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 37187949 - 37187850
Alignment:
Q  71 ttctttttgttaccttgtcaaacatgggcatagaagctcgcaaccttttgcaaacaaccacacaacccaatttgccaagcattcccactttgccaaatcc 170  Q
    ||||| |||| ||| |||||| |||| || ||||||||||| | ||||| || |||||   |||||| |||||||| | |||||||| ||| ||||||||    
T  37187949 ttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatcttttacagacaac---acaaccaaatttgcctaacattcccaatttaccaaatcc 37187853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 364
Target Start/End: Complemental strand, 38704189 - 38704157
Alignment:
Q  332 ctatgccaccacttcctagcattcctaccaatc 364  Q
    |||||||||||||||||||| ||||||||||||    
T  38704189 ctatgccaccacttcctagctttcctaccaatc 38704157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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