View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14589_low_9 (Length: 372)
Name: NF14589_low_9
Description: NF14589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14589_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 24269769 - 24269397
Alignment:
| Q |
1 |
cattcagggtgttttgtgagaagcattaggaagatgaagaggtgtttttatagttgtacttttttgtttacgatcagggaatagggtagctcatgaatta |
100 |
Q |
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| T |
24269769 |
cattcagggagttttgtgagaagcattaggaagatgaagaggtgtttttatagttgtacttttttgtttacgatcagggaatagggtagctcatgaatta |
24269670 |
T |
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| Q |
101 |
gccaatacacttttattaagcgcaattcaatatggatcgagagatccttgaggatttggcctatctgtgtaac--------gttgatttaatataatctc |
192 |
Q |
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| T |
24269669 |
gccaatacacttttattaagcgcaattcaatatggatcgagagatccttgaggatttggcctatctgtgtaacgctgatttgttgatttaatataatctc |
24269570 |
T |
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| Q |
193 |
ttttgtttat---nnnnnnnnncaccaatataagtgcatcatatgacgatctattatgctacacacaatatacattaaaaactttgtgtcttgaggaccg |
289 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| || |
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| T |
24269569 |
ttttgtttataaaaaaaaaaaacaccaatatatgtgcatcatatgacgatctattatgctacacacaatatacattaaaaac--tgtgttttgaggatcg |
24269472 |
T |
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| Q |
290 |
atgtttctctagttatgcttgactacaactctacaagaggactcataactttgtgtctaccatcagaccacagcaagtgacca |
372 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24269471 |
atgtttctctagttatgcttga--------ctacaagaggactcataactttgtgtctaccatcagaccacagcaagtgacca |
24269397 |
T |
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