View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_high_1 (Length: 722)
Name: NF1458_high_1
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 117 - 689
Target Start/End: Original strand, 42950730 - 42951301
Alignment:
| Q |
117 |
caatggtttagaattgtgcagtatctgtgtagagattcttttattttggttaacaaatctggatataggctgtcgtttgtgttacttacacccctcactt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42950730 |
caatggtttagaattgtgcagtatctgtgtagagattcttttattttggttaacaaatctggatataggctgtcgtttgtgttacttacacccctcactt |
42950829 |
T |
|
| Q |
217 |
ggatagtaggtatgtaagtatctattttttgtatacatttggattcttgttgcgcataaaataactttttccatttctaatattttagtatggctaggat |
316 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42950830 |
ggatagtaggtatgtatgtatctattttttgtatacatttggatttttgttgcgcataaaataactttttccatttctaatattttagtatggctaggat |
42950929 |
T |
|
| Q |
317 |
aattgttttgcgcataaaataactggttttgtgtacctctgtaatgttgtggtgaaaatgtttgatcatggctggatccttgtggtgccaagatatttgc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42950930 |
aattgttttgcgcataaaataactggttttgtgtacctatgtaatgtagtggtgtaaatgtttg-tcatggctggatccttgtggtgccaagatatttgc |
42951028 |
T |
|
| Q |
417 |
atttcagattaaatttcagtggagcgttggatttggcggctgtttttggtaacacagttggaattatcacccactgtattttgtgtatgttccaaattta |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
42951029 |
atttcagattaaatttcagtggagcgttggatttggcggctgtttttggtaacacagttggaattatcatccactgtattttgtgtatgttctaaattta |
42951128 |
T |
|
| Q |
517 |
caggttttgctcagctagaacgtgaattacattgtcactgcacattgagaatgtctcaactattgttacgttgaactgttagcaatactggttagataaa |
616 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42951129 |
caagttttgctcagctagaacgtgaattacattgtcactgcacattgagaatgtctcaactattgttacgttgaactgttggcaatactggttagataaa |
42951228 |
T |
|
| Q |
617 |
taaatttctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa |
689 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42951229 |
taaatttctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa |
42951301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 42950591 - 42950697
Alignment:
| Q |
18 |
ttattgaatgaatctgtctagttaggagttaggactgccatttcnnnnnnnacaagttcatggtttcaggcttgttataacttagaagaagcctttcgcc |
117 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42950591 |
ttattgaatgaatctgtttagttaggagttaggactgtcatttctttttttacaagttcatggtttcagacttgttataacttagaagaagcctttcgcc |
42950690 |
T |
|
| Q |
118 |
aatggtt |
124 |
Q |
| |
|
||||||| |
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|
| T |
42950691 |
aatggtt |
42950697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 4e-86; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 336 - 689
Target Start/End: Original strand, 2852566 - 2852930
Alignment:
| Q |
336 |
taactggttttgtgtacctctgtaatgttgtggtgaaaatgtttgatcatggctggatccttgtggtgccaagatatttgcatttcagattaaatttcag |
435 |
Q |
| |
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||||||||||||| || |||||||||| |||||||| ||||||||| | |||||||||||||||| || || | | || | ||||||| |||||| |
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| T |
2852566 |
taactggttttgtatatttctgtaatgtagtggtgaagatgtttgattacggctggatccttgtggagctgggacagtct-atattagattaattttcag |
2852664 |
T |
|
| Q |
436 |
tggagcgttggatttggcggctgtttttggtaacacagt--tggaattatcacccactgtattttgtgtatgttccaaatttacaggttttgctcagcta |
533 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| || | |||||||||| |||||| ||| ||| ||| | |||||||||||||||||||||||| |
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|
| T |
2852665 |
tggggcgttggatttggcggctgtttttggtaacaatgtgctagaattatcacacactgttattt-tgtttgtactaaatttacaggttttgctcagcta |
2852763 |
T |
|
| Q |
534 |
gaacgtgaattacattgtcactgcacattgagaatgtctcaactattgttacgttgaactgttagcaatac-----------tggttagataaataaatt |
622 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |
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| T |
2852764 |
gaacttgaattacatagtcactgcacattgagaatgtctcaactattgttacactgaactgttagcaatacttgttggcaaatggttagagaaataaatt |
2852863 |
T |
|
| Q |
623 |
tctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa |
689 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2852864 |
tctgtgttagttttgttttttaagtaatcaatgtacaactcctccaaaagtaatcatgtacaatgaa |
2852930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 336 - 689
Target Start/End: Original strand, 2904598 - 2904962
Alignment:
| Q |
336 |
taactggttttgtgtacctctgtaatgttgtggtgaaaatgtttgatcatggctggatccttgtggtgccaagatatttgcatttcagattaaatttcag |
435 |
Q |
| |
|
||||||||||||| || |||||||| || |||||||| ||||||||| | |||||||||||||||| || || | | || | ||||||| |||||| |
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|
| T |
2904598 |
taactggttttgtatatctctgtaacgtagtggtgaagatgtttgattacggctggatccttgtggagctgggacagtct-atattagattaactttcag |
2904696 |
T |
|
| Q |
436 |
tggagcgttggatttggcggctgtttttggtaacac--agttggaattatcacccactgtattttgtgtatgttccaaatttacaggttttgctcagcta |
533 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| || | |||||||||| |||||| ||| ||| ||| | |||||||||||||||||||||||| |
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| T |
2904697 |
tggggcgttggatttggcggctgtttttggtaacaatgagctagaattatcacacactgttattt-tgtttgtactaaatttacaggttttgctcagcta |
2904795 |
T |
|
| Q |
534 |
gaacgtgaattacattgtcactgcacattgagaatgtctcaactattgttacgttgaactgttagcaatac-----------tggttagataaataaatt |
622 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |
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| T |
2904796 |
gaacttgaattacatagtcactgcacattgagaatgtctcaactattgttacactgaactgttagcaatacttgttggcaaatggttagagaaataaatt |
2904895 |
T |
|
| Q |
623 |
tctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa |
689 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
2904896 |
tctgtgttagttttgttttttaagtaatcaatgtacaactcctccaaaagtaatcatgtacaatgaa |
2904962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 117 - 326
Target Start/End: Original strand, 2904359 - 2904572
Alignment:
| Q |
117 |
caatggtttagaattgtgcagtatctgtgtagagattcttttattttggttaacaaatctggatataggctgtcgtttgtgttacttacacccctcactt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||| |
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|
| T |
2904359 |
caatggtttagaattgtgcagtatctgtgtagagattcctttattttggttaacaaatctggatataggttgtcgattgtgttacttacactcctcactt |
2904458 |
T |
|
| Q |
217 |
ggatagtag----gtatgtaagtatctattttttgtatacatttggattcttgttgcgcataaaataactttttccatttctaatattttagtatggcta |
312 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| | |
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|
| T |
2904459 |
ggatagtaggtatgtatgtatgtatctattttttgtatacatttggattcttgttgcgcataaaataacattttcaatttctaatattttagcatggttg |
2904558 |
T |
|
| Q |
313 |
ggataattgttttg |
326 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
2904559 |
ggatgattgttttg |
2904572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 117 - 326
Target Start/End: Original strand, 2852327 - 2852540
Alignment:
| Q |
117 |
caatggtttagaattgtgcagtatctgtgtagagattcttttattttggttaacaaatctggatataggctgtcgtttgtgttacttacacccctcactt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |
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|
| T |
2852327 |
caatggtttagaattgtgcagtatctgtgtagagattcctttattttggttaacaaatctggatataggttgtctattgtgttacttacactcctcactt |
2852426 |
T |
|
| Q |
217 |
ggatagtag----gtatgtaagtatctattttttgtatacatttggattcttgttgcgcataaaataactttttccatttctaatattttagtatggcta |
312 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| | |
|
|
| T |
2852427 |
ggatagtaggtatgtatgtatgtatctattttttgtatacatttggattcttgttgcgcataaaataacattttcaatttctaatattttagcatggttg |
2852526 |
T |
|
| Q |
313 |
ggataattgttttg |
326 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
2852527 |
ggatgattgttttg |
2852540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 2852249 - 2852305
Alignment:
| Q |
69 |
acaagttcatggtttcaggctt-gttataacttagaagaagcctttcgccaatggtt |
124 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||||||||||||||| || |||||| |
|
|
| T |
2852249 |
acaagtccatggtttcagcctttgttataacttagaagaagcctttcacccatggtt |
2852305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 2904281 - 2904337
Alignment:
| Q |
69 |
acaagttcatggtttcaggctt-gttataacttagaagaagcctttcgccaatggtt |
124 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||||||||||||||| || |||||| |
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|
| T |
2904281 |
acaagtccatggtttcagcctttgttataacttagaagaagcctttcacccatggtt |
2904337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 365 - 431
Target Start/End: Original strand, 1179628 - 1179694
Alignment:
| Q |
365 |
gtggtgaaaatgtttgatcatggctggatccttgtggtgccaagatatttgcatttcagattaaatt |
431 |
Q |
| |
|
|||||||| |||| || ||| |||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1179628 |
gtggtgaagatgtatggtcactgctggatccttgtggtgctgggatatttgcatttcagattaaatt |
1179694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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