View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_high_14 (Length: 349)
Name: NF1458_high_14
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 2617834 - 2618139
Alignment:
| Q |
1 |
actttgatttgcatgttacaagcacatcagaagtcatcacaagtgtctcaaacgacatcctagtaattcaagatgttcttagtgaaaaggtataaaaatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2617834 |
actttgatttgcatgttacaagcacatcagaagtcatcacaagtgtctcaaacgacatcctagtaattcaagatgttcttagtgaaaaggtataaaaatt |
2617933 |
T |
|
| Q |
101 |
aaaatttgttttactttatatcaattttattctatatagggatgaaaatgcgaagtcacgctaagtcagactttgattatgttgaataacactacataat |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2617934 |
aaaatttattttactttatatcaattttattctatatagggatgaaaatgcgaagtcacgctaagtcagactttgattatcttgaataacactacataat |
2618033 |
T |
|
| Q |
201 |
atctattatatagtcattcacatggtttttaaaagtcttagaaacgctcttttcaatacaaatattttttctcttgtttccttaactaatatcctgagag |
300 |
Q |
| |
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|| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || |
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| T |
2618034 |
atatattatatagtcattcacacggtttttaaaagtcatagaaacgctcttttcaatacaaatattttttcttttgtttctttaactaatatcctgaaag |
2618133 |
T |
|
| Q |
301 |
cactag |
306 |
Q |
| |
|
|||||| |
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|
| T |
2618134 |
cactag |
2618139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 2584049 - 2584239
Alignment:
| Q |
1 |
actttgatttgcatgttacaagcacatcagaagtcatcacaagtgtctcaaacgacatcctagtaattcaagatgttcttagtgaaaaggtataaaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2584049 |
actttgatttgcatgttacaagcacatcagaagtcatcacaagtgtctctaacgacatcctagtaattcaagatgttcttagtgaaaaggtataaatttt |
2584148 |
T |
|
| Q |
101 |
aaaatttgttttactttatatcaatttt--attctatatagggatgaaaatgcgaagtcacgctaagtcagactttgattatgttgaataa |
189 |
Q |
| |
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| || ||||||||||||| |||||| ||||||||||||||||||| |||||||| || ||| ||||||||||||||||||||||| |
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| T |
2584149 |
ttatttatttttactttatataaatttttatttctatatagggatgaaaacacgaagtcatgccaagccagactttgattatgttgaataa |
2584239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 2678983 - 2678834
Alignment:
| Q |
1 |
actttgatttgcatgttacaagcacatcagaagtcatcacaagtgtctcaaacgacatcctagtaattcaagatgttcttagtgaaaaggtataaaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||| | |
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|
| T |
2678983 |
actttgatttgcatgttacaagcacatcagaagtcatcacaagtgtctctaacgacagcctagtgattcaagatgttcttagtgaaaaggtataaaaaat |
2678884 |
T |
|
| Q |
101 |
aaaatttgttttactttatatcaa-ttttattctatatagggatgaaaat |
149 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| | |||||||||| |
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|
| T |
2678883 |
aaaatttgttttactttatatcaatttttattttatacaaggatgaaaat |
2678834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 2646582 - 2646485
Alignment:
| Q |
1 |
actttgatttgcatgttacaagcacatcagaagtcatcacaagtgtctcaaacgacatcctagtaattcaagatgttcttagtgaaaaggtataaaaa |
98 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| || ||||||||||| |||||||||||||||||||||||| |
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|
| T |
2646582 |
actttgatttgcatattacaagcacatcagaagtcatcaccagtgtctctaacgacagtctggtaattcaagacgttcttagtgaaaaggtataaaaa |
2646485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 2601804 - 2601713
Alignment:
| Q |
1 |
actttgatttgcatgttacaagcacatcagaagtcatcacaagtgtctcaaacgacatcctagtaattcaagatgttcttagtgaaaaggta |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| || || | ||| ||||||||||||||| |||| ||||||||| |
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|
| T |
2601804 |
actttgatttgcatgttacaagcacatcagaagtcatcaccagtgtctccaatgatagcctggtaattcaagatgttattagcgaaaaggta |
2601713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 2431323 - 2431420
Alignment:
| Q |
1 |
actttgatttgcatgttacaagcacatcagaagtcatcacaagtgtctcaaacgacatcctagtaattcaagatgttcttagtgaaaaggtataaaaa |
98 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||| ||||| || | |||| ||||||||||||||||||||||||||| ||||||| |||| |
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| T |
2431323 |
actttgatttgcatgttacaagcacaacagatgtcatcaccagtgtatctagtgacagcctagtaattcaagatgttcttagtgacaaggtatgaaaa |
2431420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 2574402 - 2574311
Alignment:
| Q |
1 |
actttgatttgcatgttacaagcacatcagaagtcatcacaagtgtctcaaacgacatcctagtaattcaagatgttcttagtgaaaaggta |
92 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||| || || | ||| ||||||||||||||| |||| ||||||||| |
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|
| T |
2574402 |
actttgatttgcatattacaagcacatcagaagtcatcaccagtgtctccaatgatagcctcgtaattcaagatgttattagcgaaaaggta |
2574311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 2584882 - 2584961
Alignment:
| Q |
227 |
ttttaaaagtcttagaaacgctcttttcaatacaaatattttttctcttgtttccttaactaatatcctgagagcactag |
306 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |||| | |||||| ||||||||||||||| || |||||||||||||| |
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| T |
2584882 |
ttttaaaagtctaagaaatgctcttttcaataaaaatttgttttcttttgtttccttaactagtaccctgagagcactag |
2584961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 2447399 - 2447489
Alignment:
| Q |
1 |
actttgatttgcatgttacaagcacatcagaagtcatcacaagtgtctcaaacgacatcctagtaattcaagatgttcttagtgaaaaggt |
91 |
Q |
| |
|
||||||||||||| | |||||||| ||||||||||||||| | |||||| | |||| |||| ||||||||||||| |||||||||||||| |
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|
| T |
2447399 |
actttgatttgcacggtacaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaaggt |
2447489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 17875064 - 17874976
Alignment:
| Q |
3 |
tttgatttgcatgttacaagcacatcagaagtcatcacaagtgtctcaaacgacatcctagtaattcaagatgttcttagtgaaaaggt |
91 |
Q |
| |
|
||||||||||| ||||||||||| |||||| ||||||| |||||||| || |||| | ||||||||||||||||||||||| ||||| |
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|
| T |
17875064 |
tttgatttgcaggttacaagcacctcagaaatcatcactagtgtctctaatgacactattgtaattcaagatgttcttagtgagaaggt |
17874976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 2321875 - 2321915
Alignment:
| Q |
250 |
ttttcaatacaaatattttttctcttgtttccttaactaat |
290 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||||||||| |
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|
| T |
2321875 |
ttttcaatgcaaatatttcttcttttgtttccttaactaat |
2321915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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