View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_high_15 (Length: 329)
Name: NF1458_high_15
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 5 - 310
Target Start/End: Original strand, 53447424 - 53447729
Alignment:
| Q |
5 |
tgtccaagaatattattaatttccgcgatattcaagaaaaacacatagtgctccttaacagacttaactcaaagagattgaaactcaaaagaagaataac |
104 |
Q |
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| T |
53447424 |
tgtccaataatattattaatttctgcgatattcaagaaaaacacatagcgctccttaacagacttaactcaaagagattgaaactcaaaagaagaataac |
53447523 |
T |
|
| Q |
105 |
aataaagaggttatgcaagaaagttggaggaatcggtttagtcgtttcagaaaccgctcttttggtggctttgttagtctttgctttccatagcataatt |
204 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53447524 |
aataaagaggttatgcaagaaagttggagggatcggtttagtcgtttcagaaaccgctcttttggtggctttgttagtctttgctttccatagcataatt |
53447623 |
T |
|
| Q |
205 |
gggttagctgctgccccttatgtagtcggtggatcctttggtttgatgaagaagagatccaagtgggaaaataaaaagtataattcttgtgaaaaactat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53447624 |
gggttagctgctgccccttatgtagtcggtggatcctttggtttgatgaagaagagatccaagtgggaaaataaaaagtataattcttgtgaaaaactat |
53447723 |
T |
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| Q |
305 |
atgaac |
310 |
Q |
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|||||| |
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| T |
53447724 |
atgaac |
53447729 |
T |
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