View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_high_20 (Length: 269)
Name: NF1458_high_20
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 47037349 - 47037096
Alignment:
| Q |
1 |
gtgaactatgttatcttgatgatgattgatcaaaatatgtgcaaatgcaattaaccaatgtgaaaagaggccaacgaatgacgaagagataaagatagga |
100 |
Q |
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| T |
47037349 |
gtgaactatattatcttgatgatgatagatcaaaatatgtgcaaatgcaattaaccaatgtgaaaagaggccaacgaatgacgaagagataaagatagga |
47037250 |
T |
|
| Q |
101 |
ttcataggaacggcagtggcccaacaaagcggcattagtttgaaacgtac-nnnnnnnnttaacattgattcggttgctaaaaacaagtggatattgaga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47037249 |
ttcataggaacggcagtggcccaacaaagcggcattagtttgaaacgtacaaaaaaaatttaacattgattcggttgctaaaaacaagtggatattgaga |
47037150 |
T |
|
| Q |
200 |
taagcaccaaaagaggcagttgttgatatgtagaatgagcgagacaggtgaaag |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47037149 |
taagcaccaaaagaggcagttgttgatatgtagaatgagcgagacaggtgaaag |
47037096 |
T |
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