View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_high_3 (Length: 534)
Name: NF1458_high_3
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 21 - 527
Target Start/End: Original strand, 36932609 - 36933116
Alignment:
| Q |
21 |
taaatattaatctaacaattaaccgctaacatttgttattcaaaagaagaaattatcatagataacaagttgacattatgtcctttcttaaggctttgtt |
120 |
Q |
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|||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36932609 |
taaatattaatctaacaactaactgctaatatttgttattcaaaagaagaagttatcatggataacaagttgacattatgtcctttcttaaggctttgtt |
36932708 |
T |
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| Q |
121 |
tgacaaggtacaatttcgatcatatagtagatatcatataaccaaacttaacccaattggtatcaattttgcttacaggctgcatgcataattttttact |
220 |
Q |
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| T |
36932709 |
tgacaaggttcaatttcgagcatatagcatatatcatataaccaaacttaacccaattgatatcaattttccttacaaaa-gcatacataaatttttact |
36932807 |
T |
|
| Q |
221 |
agcttataaaattcgatgataagcaacataaattagtttttgaacttataacttatcatgtttactttccaatctacttttattatcttaattgaaaaaa |
320 |
Q |
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| T |
36932808 |
agcttataaaattcgatgataaacaacataaattagtttttgaacttataacttatcatatttactttccaatctacttttattatcttaattgaaaaaa |
36932907 |
T |
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| Q |
321 |
ctaaatgttaattcatattaattacacttttgatctccaattttaccccctttcacgaaaaaagtccccttattttaaaatcgtgtca--nnnnnnnatg |
418 |
Q |
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| T |
36932908 |
ttaaatattaattcatatcaattatacttttgatctccaattttaccctttttcacgaaaagagtccccttattttaaaatcgtgtcatttttttttatg |
36933007 |
T |
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| Q |
419 |
atgtgacatgcaagatgatgatgtgaagnnnnnnnnncactattttagagaaatatgaaaaatacacttgtaaacatgttcttatttcactttatatttg |
518 |
Q |
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| T |
36933008 |
atgtgacatgcaagatgatgatgtgaaaaaaaaagcacttctttttagagaaatatgaaaaatacacttgtaaacatgttcttatttcactttatatttg |
36933107 |
T |
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| Q |
519 |
ctagtatta |
527 |
Q |
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| T |
36933108 |
ctagtatta |
36933116 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 5556084 - 5556128
Alignment:
| Q |
21 |
taaatattaatctaacaattaaccgctaacatttgttattcaaaa |
65 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
5556084 |
taaatattaatctaacaattaattactaacatttgttattaaaaa |
5556128 |
T |
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