View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_low_10 (Length: 425)
Name: NF1458_low_10
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_low_10 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 47544535 - 47544127
Alignment:
| Q |
1 |
caacagcagaattgttatatttttggtccacatctgaaaaacgcttcaacaatgaagaattttcacctcttaatgtagagacctaataagatttgaaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47544535 |
caacagcagaattgttatatttttggtccacatctgaaaaatgcttcaacaatgaagaattttcacctcttaatgtagagacctaataagatttgaaaga |
47544436 |
T |
|
| Q |
101 |
ctaattaggatggatacagagatcagataagagaaggcataagacttggatttaaaaagcatgcatgcagacctgtgtttcaagctcagtattcttagct |
200 |
Q |
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| T |
47544435 |
ctaattaggatggatacagagatcagataagagaaggcataagacttggatttaaaaagcatgcatgcagacctgtgtttcaagctcagtattcttagct |
47544336 |
T |
|
| Q |
201 |
atctttctatctctcgatcgtttagctgattccctattttggagcatcctgaaaaggcaatgtcataaggcattaagaccatgtttggataagcaattta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47544335 |
atctttctatctctcgatcgtttagctgattccctattttggagcatcctgaaaaggcaatgtcataaggcattaagaccatgtttggataagcgattta |
47544236 |
T |
|
| Q |
301 |
agtaaacacacacttataacacaagtgtttatcatgtcgtatgtgaaacatattgaactcctagaatattgttacctcttaagtcgttttgcatcggaag |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47544235 |
agcaaacacacacttataacacaagtgtttatcatgtcgtatgtgaaacatattgaactcctagaatattgttacctcttaagtcgttttgcatcggaag |
47544136 |
T |
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| Q |
401 |
ggttattgt |
409 |
Q |
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||||||||| |
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| T |
47544135 |
ggttattgt |
47544127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 275
Target Start/End: Complemental strand, 47528314 - 47528128
Alignment:
| Q |
89 |
agatttgaaagactaattaggatggatacagagatcagataagagaaggcataagacttggatttaaaaag-catgcatgcagacctgtgtttcaagctc |
187 |
Q |
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| T |
47528314 |
agatttgaacgactaattaagatggacatagagatcagagaagaaaatgcagaagaaatggatctaaaaaaacatgcatgctgacctgtgtttcaagctc |
47528215 |
T |
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| Q |
188 |
agtattcttagctatctttctatctctcgatcgtttagctgattccctattttggagcatcctgaaaaggcaatgtcataaggcatta |
275 |
Q |
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| T |
47528214 |
agttaaatgagcttgctttcttcgtcttgagcgtctagctgattccctattagagagcatcctg-aaaggcaatgtcattaggcatta |
47528128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 47528426 - 47528335
Alignment:
| Q |
1 |
caacagcagaattgttatatttttggtccacatctgaaaaacgcttcaacaatgaagaattttcacctcttaatgtagagacctaataagat |
92 |
Q |
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| T |
47528426 |
caacagcagaattgttgaatttttgggtcacatctgttaaacgctttaacaatgaagaattttcacctcttaattcagaaacctaataagat |
47528335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 367
Target Start/End: Original strand, 10281666 - 10281776
Alignment:
| Q |
252 |
aaaaggcaatgtcataaggcattaagaccatgtttggataagcaatttaagtaaacacacacttataacacaagtgtttatcatgtcgtatgtgaaacat |
351 |
Q |
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| T |
10281666 |
aaaaggcagtgtcattagatattaagatcatgtttggataaacaatttaattaaacaaa-----atagcacatgcgtttatcatgtcctatgagaaacac |
10281760 |
T |
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| Q |
352 |
attgaactcctagaat |
367 |
Q |
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| T |
10281761 |
attgaactcctagaat |
10281776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 47537902 - 47537849
Alignment:
| Q |
89 |
agatttgaaagactaattaggatggatacagagatcagataagagaaggcataa |
142 |
Q |
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| T |
47537902 |
agatttaaaagactaattaagatggatacagagatcagagaatagaaggcataa |
47537849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 47538239 - 47538183
Alignment:
| Q |
29 |
cacatctgaaaaacgcttcaacaatgaagaattttcacctcttaatgtagagaccta |
85 |
Q |
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| T |
47538239 |
cacatctgataaacgcgtcaacaacgaagaatgttcaccttttaatgtagagaccta |
47538183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 101466 - 101429
Alignment:
| Q |
336 |
gtcgtatgtgaaacatattgaactcctagaatattgtt |
373 |
Q |
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| T |
101466 |
gtcgtatgtgaaacatattgaactcctagaatcttgtt |
101429 |
T |
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