View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1458_low_11 (Length: 404)

Name: NF1458_low_11
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1458_low_11
NF1458_low_11
[»] chr4 (5 HSPs)
chr4 (20-130)||(10147200-10147310)
chr4 (266-383)||(10146770-10146888)
chr4 (255-315)||(10137708-10137767)
chr4 (176-242)||(10146908-10146975)
chr4 (17-55)||(41003216-41003254)
[»] scaffold2098 (1 HSPs)
scaffold2098 (18-55)||(659-696)
[»] scaffold0011 (1 HSPs)
scaffold0011 (18-67)||(19441-19489)
[»] chr7 (2 HSPs)
chr7 (17-68)||(1513487-1513537)
chr7 (21-53)||(42286338-42286370)
[»] chr5 (4 HSPs)
chr5 (20-67)||(9408998-9409045)
chr5 (18-55)||(9963428-9963465)
chr5 (23-55)||(3102178-3102210)
chr5 (21-69)||(20735224-20735272)
[»] chr3 (1 HSPs)
chr3 (20-63)||(26817982-26818025)
[»] chr8 (2 HSPs)
chr8 (21-69)||(14012610-14012658)
chr8 (17-65)||(36633665-36633713)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 10147310 - 10147200
Alignment:
Q  20 acccctacatataacaatgcactgtccctgccaactcaattatgttcacg-agatatcgtttctcttttttctattcacttagttttaatgtgtgtcaat 118  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  10147310 acccctacatataacaatgcattgtccctgccaactgtattatgttcacggagatatcatttctcttttt-ctattcacttagttttaatgtgtgtcaat 10147212  T
Q  119 tacgggaatata 130  Q
    ||||||||||||    
T  10147211 tacgggaatata 10147200  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 266 - 383
Target Start/End: Complemental strand, 10146888 - 10146770
Alignment:
Q  266 ataattttgaaggactgtattttgcagatatttttaaaaattggaatggaaaaaattgggtgttacttttgtttacttttaactgcagatgtaaataatc 365  Q
    |||||||||||||||||||||||||||| ||||||  ||||||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||    
T  10146888 ataattttgaaggactgtattttgcagacatttttttaaattggaatggacaaaattaggtgttgcttttgttttcttttaactgcagatgtaaataatc 10146789  T
Q  366 -agtgcacggagacttttt 383  Q
      ||||||||| |||||||    
T  10146788 gggtgcacggatacttttt 10146770  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 10137767 - 10137708
Alignment:
Q  255 ttgtcaagtggataattttgaaggactgtattttgcagatatttttaaaaattggaatgga 315  Q
    |||||||||||||||||| |||||||| ||||||||||| ||||||  |||||||||||||    
T  10137767 ttgtcaagtggataattt-gaaggactatattttgcagacatttttttaaattggaatgga 10137708  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 10146975 - 10146908
Alignment:
Q  176 taatcaaatacttcgatccccatcttc-aacataaaaagctaacgatattagtatcgactgtttggaa 242  Q
    |||| |||||||||||||||||| ||| ||||||||||  ||||||||||| ||| || |||||||||    
T  10146975 taattaaatacttcgatccccatgttcaaacataaaaaattaacgatattaatattgagtgtttggaa 10146908  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 41003216 - 41003254
Alignment:
Q  17 tcaacccctacatataacaatgcactgtccctgccaact 55  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  41003216 tcaacccctgcatataacaatgcattgtccctgccaact 41003254  T

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Target: scaffold2098 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold2098
Description:

Target: scaffold2098; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 659 - 696
Alignment:
Q  18 caacccctacatataacaatgcactgtccctgccaact 55  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  659 caacccctacatataacaatgcattgtccctgccaact 696  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 19441 - 19489
Alignment:
Q  18 caacccctacatataacaatgcactgtccctgccaactcaattatgttca 67  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||||||    
T  19441 caacccctacatataacaatgca-tgtccgtgccaactaaattatgttca 19489  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 1513537 - 1513487
Alignment:
Q  17 tcaacccctacatataacaatgcactgtccctgccaactcaattatgttcac 68  Q
    |||||||||||||||||||||||| |||||||||||||| | ||||| ||||    
T  1513537 tcaacccctacatataacaatgca-tgtccctgccaactgatttatgctcac 1513487  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 42286370 - 42286338
Alignment:
Q  21 cccctacatataacaatgcactgtccctgccaa 53  Q
    |||||||||||||||||||| ||||||||||||    
T  42286370 cccctacatataacaatgcattgtccctgccaa 42286338  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 9408998 - 9409045
Alignment:
Q  20 acccctacatataacaatgcactgtccctgccaactcaattatgttca 67  Q
    |||||| |||||||||||||| |||||||||||||| | |||||||||    
T  9408998 acccctgcatataacaatgcattgtccctgccaactgagttatgttca 9409045  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 9963465 - 9963428
Alignment:
Q  18 caacccctacatataacaatgcactgtccctgccaact 55  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  9963465 caacccctgcatataacaatgcattgtccctgccaact 9963428  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 3102178 - 3102210
Alignment:
Q  23 cctacatataacaatgcactgtccctgccaact 55  Q
    |||||||||||||||||| ||||||||||||||    
T  3102178 cctacatataacaatgcattgtccctgccaact 3102210  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 20735224 - 20735272
Alignment:
Q  21 cccctacatataacaatgcactgtccctgccaactcaattatgttcacg 69  Q
    ||||||||||||| |||||| |||||||||||||| |  ||||||||||    
T  20735224 cccctacatataataatgcattgtccctgccaactgagctatgttcacg 20735272  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 26818025 - 26817982
Alignment:
Q  20 acccctacatataacaatgcactgtccctgccaactcaattatg 63  Q
    ||||||||||||||||||||||||||| || ||||| |||||||    
T  26818025 acccctacatataacaatgcactgtccatgtcaactaaattatg 26817982  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 14012658 - 14012610
Alignment:
Q  21 cccctacatataacaatgcactgtccctgccaactcaattatgttcacg 69  Q
    ||||| |||||||||||||| |||||||||||||| || |||| |||||    
T  14012658 cccctgcatataacaatgcattgtccctgccaactgaactatgctcacg 14012610  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 36633665 - 36633713
Alignment:
Q  17 tcaacccctacatataacaatgcactgtccctgccaactcaattatgtt 65  Q
    |||||||||||||||||||||||| |||  ||||||||| | |||||||    
T  36633665 tcaacccctacatataacaatgcattgtttctgccaactgatttatgtt 36633713  T

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