View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_low_13 (Length: 370)
Name: NF1458_low_13
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 67 - 348
Target Start/End: Original strand, 46466297 - 46466573
Alignment:
| Q |
67 |
caaaatgcaatcatgcttctcctcaacgacggcgatgccgatcctcatcttttcaccaccgtaatcgatccgttacgttcaatcttgcgacgatcacaca |
166 |
Q |
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| T |
46466297 |
caaaatgcaatcatgcttctcctcaacgacggcgatgccgatcctcatcttttcaccaccgtaatc----cgttacgttcaatcttgcgacgatcacaca |
46466392 |
T |
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| Q |
167 |
gttcagaaatccctcctactctacctcgaaaacattgataaaaccgattcaactggtaaacttctccctgaaatcatcctcattaca-aactctccttag |
265 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
46466393 |
gttcagaaatccctccttctctacctcgaaaacattgataaaaccgattcaactggtaaacttctccctgaaatcatcctcattatacaactctccttag |
46466492 |
T |
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| Q |
266 |
cactcttcaatgccctctaacgaattcattcgcagtgttactcttcgttttctttgccgtatcaatgaatctgaaatccttga |
348 |
Q |
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| T |
46466493 |
caatcttcaatgcc--ctaacgaattcattcgcagtgttactcttcgttttctttgccgtatcaatgaatctgaaatccttga |
46466573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 1471273 - 1471385
Alignment:
| Q |
134 |
atccgttacgttcaatcttgcgacgatcacacagttcagaaatccctcctactctacctcgaaaacattgataaaaccgattcaactggtaaacttctcc |
233 |
Q |
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||||||||||| | |||||||||||||||| ||||| ||| |||||| || ||||| |||| || |||||||||||||| |||||| |||||| |
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| T |
1471273 |
atccgttacgtcctcacttgcgacgatcacaccgttcaaaaactcctccttctttaccttgaaatcaccgataaaaccgattctcgcggtaaagttctcc |
1471372 |
T |
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| Q |
234 |
ctgaaatcatcct |
246 |
Q |
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| T |
1471373 |
ctgaaatgatcct |
1471385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 55203269 - 55203216
Alignment:
| Q |
282 |
ctaacgaattcattcgcagtgttactcttcgttttctttgccgtatcaatgaat |
335 |
Q |
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||||||||||||| ||| |||| ||||| ||||||||| |||| |||||||||| |
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| T |
55203269 |
ctaacgaattcatgcgcggtgtaactctccgttttcttagccgcatcaatgaat |
55203216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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