View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_low_14 (Length: 358)
Name: NF1458_low_14
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 46894932 - 46894610
Alignment:
| Q |
20 |
gtttgttttcttattaatctcaagttcatcaatccatcccaacattattctggaaattcataaccatcaaacacttccaaaataatgtcacaatctctgc |
119 |
Q |
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| T |
46894932 |
gtttgttttcttattaatctcaagttcatcaatccatcccaacattattctggaaattcataaccatcaaacacttccaaaataatgtcacaatctctgc |
46894833 |
T |
|
| Q |
120 |
cgcttattaaaaacggtccctctctatatatagtgtaattcactaacttgatcaactcaacacatctttctatacacaccaacatggcttctatttccat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46894832 |
cgcttattaaaaacggtccctctctatatatagtgtaattcactaacttgatcaactcaacacatctttctatacacaccaacatggcttctatttccat |
46894733 |
T |
|
| Q |
220 |
ccttcattttctactcatttctctcttttgctctttccttttagtctcatctcgccaccaacaacaaccaaactccaatccaaaaccaaatctattggtt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46894732 |
ccttcattttctactcatttctctcttttgctctttccttttagtctcatctcgccaccaacaacaaccaaactccaatccaaaaccaaatctattggtt |
46894633 |
T |
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| Q |
320 |
ttaccagttcaacaagatgcttc |
342 |
Q |
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||||||||||||||||||||||| |
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| T |
46894632 |
ttaccagttcaacaagatgcttc |
46894610 |
T |
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