View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_low_17 (Length: 356)
Name: NF1458_low_17
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 7639901 - 7639716
Alignment:
| Q |
11 |
cagagagcgttgttatattttgaaaagactgaggtatatcatcaatgtaatgacttaattgcaacctcaaatgaattctttcttgctcagtgaaatcgta |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7639901 |
cagagagcgttgttatattttgaaaagactgaggtatatcatgaatgtaatgacttaattgcaacctcaaatgaattctttcttgctcagtgaaatcgta |
7639802 |
T |
|
| Q |
111 |
agaatagaaagtctctgctaacctacaaatacaattaatgtaatttgaagttcctatacgataggatcaaataattcgaagttcga |
196 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||| |
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| T |
7639801 |
agaatagaaagtctctgctaacctacaaatataattaatgtaattcgaagttcctatacaatagggtcaaataattcgaagatcga |
7639716 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 30384124 - 30384168
Alignment:
| Q |
20 |
ttgttatattttgaaaagactgaggtatatcatcaatgtaatgac |
64 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
30384124 |
ttgttatattttgaaaagtctgaggtatatcaacaatgtaatgac |
30384168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 30385341 - 30385408
Alignment:
| Q |
81 |
atgaattctttcttgctcagtgaaatcgtaagaatagaaagtctctgctaacctacaaatacaattaatg |
150 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||| |||||| |||||||||| ||||| |||||||| |
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| T |
30385341 |
atgaagtctttcttgctcagtgaaatc--attaatagtaagtctttgctaacctataaatataattaatg |
30385408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 25280294 - 25280112
Alignment:
| Q |
14 |
agagcgttgttatattttgaaaagactgaggtatatcatcaatgtaatgacttaattgcaacctcaaatgaattctttcttgctcagtgaaatcgtaaga |
113 |
Q |
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|||| ||||||| ||||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||| |
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| T |
25280294 |
agagtgttgttaaattttgaaaagactgagatatattagcaatgtaatgacttacttgcaacctcaaatgagctctttcttgctcagtaaaatcataaga |
25280195 |
T |
|
| Q |
114 |
atagaaagtctctgctaacctacaaatacaattaatgtaatttgaagttcctatacgataggatcaaataattcgaagttcga |
196 |
Q |
| |
|
|||||| ||||||||||||||||||| | ||||||||||||| |||||||||||| || ||||||||||||||||||||||| |
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| T |
25280194 |
atagaacgtctctgctaacctacaaacataattaatgtaattcgaagttcctatatgacgggatcaaataattcgaagttcga |
25280112 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 2829647 - 2829505
Alignment:
| Q |
11 |
cagagagcgttgttatattttgaaaagactgaggtatatcatcaatgtaatgacttaattgcaacctcaaatgaattctttcttgctcagtgaaatcgta |
110 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||| ||||||||||||||||||||| | |
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|
| T |
2829647 |
cagagagtgttgttatattttgaaaagactgaggtatatcaacaatgtaatgacttaattgcaacttaagatgaagtctttcttgctcagtgaaatcatt |
2829548 |
T |
|
| Q |
111 |
agaatagaaagtctctgctaacctacaaatacaattaatgtaa |
153 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
2829547 |
agaatagtaagtctctgctaacctacaaatataattaatgtaa |
2829505 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 304470 - 304609
Alignment:
| Q |
11 |
cagagagcgttgttatattttgaaaagactgaggtatatcatcaatgtaatgacttaattgcaacctcaaatgaattctttcttgctcagtgaaatcgta |
110 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||| ||||||||||||||||||||| | |
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| T |
304470 |
cagagagtgttgttatattttgaaaagactgaggtatatcaacaatgtaatgacttaattgcaacataagatgaagtctttcttgctcagtgaaatcatt |
304569 |
T |
|
| Q |
111 |
agaatagaaagtctctgctaacctacaaatacaattaatg |
150 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
304570 |
agaatagtaagtctctgctaacctacaaatataattaatg |
304609 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 7527761 - 7527625
Alignment:
| Q |
20 |
ttgttatattttgaaaagactgaggtatatcatcaatgtaat---gacttaattgcaacctcaaatgaattctttcttgctcagtgaaatcgtaagaata |
116 |
Q |
| |
|
||||||||||||||||||||| || ||| ||| || |||||| ||||||||||||||||||| |||| ||||||||||||| | ||||| | |||||| |
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|
| T |
7527761 |
ttgttatattttgaaaagactaagttatgtcaccattgtaataatgacttaattgcaacctcaattgaaatctttcttgctcaataaaatcattagaata |
7527662 |
T |
|
| Q |
117 |
gaaagtctctgctaacctacaaatacaattaatgtaa |
153 |
Q |
| |
|
| || ||||| ||||||||||||| ||||||||||| |
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|
| T |
7527661 |
gtaaatctcttataacctacaaatataattaatgtaa |
7527625 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 13769951 - 13769812
Alignment:
| Q |
11 |
cagagagcgttgttatattttgaaaagactgaggtatatcatcaatgtaatgacttaattgcaacctcaaatgaattctttcttgctcagtgaaatcgta |
110 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || | ||||| ||||||||||||||||||||| | |
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|
| T |
13769951 |
cagagagtgttgttatattttgaaaagactgaggtatatcaacaatgtaatgacttaattgcaatctaagatgaagtctttcttgctcagtgaaatcatt |
13769852 |
T |
|
| Q |
111 |
agaatagaaagtctctgctaacctacaaatacaattaatg |
150 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
13769851 |
agaatagtaagtctctgctaacctacaaatataattaatg |
13769812 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 14 - 153
Target Start/End: Original strand, 32823648 - 32823787
Alignment:
| Q |
14 |
agagcgttgttatattttgaaaagactgaggtatatcatcaatgtaatgacttaattgcaacctcaaatgaattctttcttgctcagtgaaatcgtaaga |
113 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
32823648 |
agagtgttgttatattttaaaaagactgaggtatatcagcaatgtaatgacttaattgcaacttcaaatgaattctttcttgctcagtgaaatcattaga |
32823747 |
T |
|
| Q |
114 |
atagaaagtctctgctaacctacaaatacaattaatgtaa |
153 |
Q |
| |
|
|||| || ||| |||||| ||||||||| ||||||||||| |
|
|
| T |
32823748 |
atagtaaatctatgctaatctacaaatataattaatgtaa |
32823787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 31940289 - 31940431
Alignment:
| Q |
11 |
cagagagcgttgttatattttgaaaagactgaggtatatcatcaatgtaatgacttaattgcaacctcaaatgaattctttcttgctcagtgaaatcgta |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |
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|
| T |
31940289 |
cagagagtgttgttatattttgaaaagactaaggtatatcagcaatgtaatgacttaattgcaacctcaaatgaattctttcttgttcaatgaaatcatt |
31940388 |
T |
|
| Q |
111 |
agaatagaaagtctctgctaacctacaaatacaattaatgtaa |
153 |
Q |
| |
|
||||||| || | || ||||||||||||||| |||||| |||| |
|
|
| T |
31940389 |
agaatagtaactatcggctaacctacaaatataattaacgtaa |
31940431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 24783452 - 24783586
Alignment:
| Q |
19 |
gttgttatattttgaaaagactgaggtatatcatcaatgtaatgacttaattgcaacctcaaatgaattctttcttgctcagtgaaatcgtaagaataga |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |||| ||||||||||||||| ||||||| |||||| | ||||||| | ||| |||||| |
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|
| T |
24783452 |
gttgttatattttgaaaagactgacacatatcagcaatgcaatgtcttaattgcaacctcggatgaatttgttcttgattagtgaaaccataaaaataga |
24783551 |
T |
|
| Q |
119 |
aagtctctgctaacctacaaatacaattaatgtaa |
153 |
Q |
| |
|
|||||||||||||||||||| || ||| ||||||| |
|
|
| T |
24783552 |
aagtctctgctaacctacaactataatcaatgtaa |
24783586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 17172310 - 17172173
Alignment:
| Q |
11 |
cagagagcgttgttatattttgaaaagactgaggtatatcatcaatgtaatgacttaattgcaacctcaaatgaattctttcttgctcagtgaaatcgta |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| || |
|
|
| T |
17172310 |
cagagagtgttgttatattttgaaaagactaaggtatatcaacaatgtaatgacttaattgcaaccttaaatgaattctttattgctcagggaaatcata |
17172211 |
T |
|
| Q |
111 |
agaatagaaagtctctgctaacctacaaatacaattaa |
148 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |||||| |
|
|
| T |
17172210 |
agaataaaaagtctctggtaacctacaaatataattaa |
17172173 |
T |
|
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