View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_low_2 (Length: 547)
Name: NF1458_low_2
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 537
Target Start/End: Complemental strand, 43225377 - 43224849
Alignment:
| Q |
15 |
atcacctaaatgctatccgttactcctcacttcgtttttccgcactttggcaacgataaata----------------tttgactgcgggatttaattga |
98 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
43225377 |
atcacctaagtgctatccgttactcctcgcttcgtttttccgcactttggcaacgataaatacagttaaagctatatatttgactgctggatttaattga |
43225278 |
T |
|
| Q |
99 |
cagcagagaatcaaggtccttcatg-aacgtccaacgaatggttcttattaactggtcaacaagttgatttccatttccattaaaataggacgcatatag |
197 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43225277 |
tagcagagaatcaaggtcctttatggaacgtccaacgaatggttcttattaactggtcaacaagttgatttccatttccattaaaataggacgcatatag |
43225178 |
T |
|
| Q |
198 |
cattgttgttgccgcactttattctcctccactctcccaaatcctttaccttttctcttaattaaaagctgcatattcattcttatatttatttaattaa |
297 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43225177 |
cattgttgttgccgcactttattctcctccattctcccaaatcctttaccttttctcttaattaaaagctgcatattcattcttatatttat----ttaa |
43225082 |
T |
|
| Q |
298 |
ctcatgtggtaactcatcttccttacattagtatcttaataaataaattgttacagaaaatcaattgtgtgttgattggttgctgcattgttttgaggta |
397 |
Q |
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||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43225081 |
ctcatgtcgtaactcatcttccttacattagcatctgaataaataaattgttacagaaaatcaattgtgtgttgattggttgctgcattgttttgaggta |
43224982 |
T |
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| Q |
398 |
ttaggcttgttcaaggtatgtatgtttggattttcatggcctttggaattgttccatgctatagtgcagattttttctctcatactgtgctctcnnnnnn |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
43224981 |
ttaggcttgttcaaggtatgtatgtttggattttcatggcctttggaattgttccatgc--tagtgcagattttttctctcttactgtgctct-----tt |
43224889 |
T |
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| Q |
498 |
nnnncttctcgctctttatcctattatacaactctttctt |
537 |
Q |
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||||||||||||||||| ||||||||||||||||| |
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| T |
43224888 |
tttttttctcgctctttatcctgttatacaactctttctt |
43224849 |
T |
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