View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1458_low_20 (Length: 324)

Name: NF1458_low_20
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1458_low_20
NF1458_low_20
[»] chr2 (37 HSPs)
chr2 (250-324)||(9058472-9058546)
chr2 (246-324)||(28863444-28863521)
chr2 (256-324)||(33436134-33436202)
chr2 (257-324)||(7465769-7465836)
chr2 (253-324)||(10249416-10249487)
chr2 (258-324)||(17473020-17473086)
chr2 (258-324)||(40701478-40701544)
chr2 (256-324)||(30915461-30915529)
chr2 (257-324)||(5574522-5574589)
chr2 (261-324)||(19930854-19930917)
chr2 (257-324)||(32505682-32505749)
chr2 (258-324)||(13438343-13438409)
chr2 (258-324)||(27864704-27864770)
chr2 (258-324)||(28381689-28381755)
chr2 (258-324)||(40613936-40614002)
chr2 (256-324)||(38882848-38882915)
chr2 (258-324)||(4060685-4060751)
chr2 (256-324)||(20700813-20700881)
chr2 (256-323)||(26891539-26891606)
chr2 (257-324)||(33436210-33436277)
chr2 (250-323)||(43490112-43490186)
chr2 (256-324)||(38273176-38273244)
chr2 (276-323)||(2997522-2997569)
chr2 (258-323)||(17820039-17820104)
chr2 (247-324)||(42257182-42257259)
chr2 (257-324)||(2533123-2533189)
chr2 (256-323)||(45097770-45097837)
chr2 (248-323)||(13365341-13365418)
chr2 (255-324)||(17823781-17823850)
chr2 (258-323)||(38732354-38732419)
chr2 (259-323)||(41575138-41575202)
chr2 (264-319)||(3439985-3440040)
chr2 (247-323)||(15428775-15428851)
chr2 (257-324)||(36168835-36168902)
chr2 (284-324)||(16096875-16096914)
chr2 (259-323)||(42026897-42026960)
chr2 (284-324)||(42849793-42849832)
[»] chr1 (36 HSPs)
chr1 (5-136)||(52132988-52133119)
chr1 (256-324)||(2581913-2581981)
chr1 (258-324)||(9474910-9474976)
chr1 (258-324)||(3000319-3000385)
chr1 (256-324)||(38595152-38595220)
chr1 (257-324)||(51898717-51898784)
chr1 (250-324)||(8346422-8346496)
chr1 (258-324)||(27564769-27564835)
chr1 (258-324)||(47452354-47452420)
chr1 (258-324)||(48716316-48716382)
chr1 (192-257)||(52133174-52133240)
chr1 (256-324)||(32813245-32813313)
chr1 (256-324)||(38632355-38632423)
chr1 (258-324)||(37649198-37649264)
chr1 (258-323)||(50591035-50591100)
chr1 (248-324)||(26274422-26274498)
chr1 (257-324)||(41758804-41758871)
chr1 (257-324)||(50630457-50630524)
chr1 (256-324)||(23597125-23597193)
chr1 (256-323)||(5959035-5959102)
chr1 (261-324)||(44548410-44548473)
chr1 (258-324)||(43132-43198)
chr1 (254-324)||(49811561-49811631)
chr1 (259-324)||(11152412-11152476)
chr1 (258-323)||(41608528-41608593)
chr1 (278-323)||(45044595-45044640)
chr1 (273-324)||(26440749-26440800)
chr1 (258-323)||(47748443-47748507)
chr1 (288-324)||(13414791-13414827)
chr1 (263-323)||(44453984-44454044)
chr1 (257-324)||(4401455-4401521)
chr1 (257-324)||(37926472-37926539)
chr1 (258-324)||(3302567-3302633)
chr1 (250-324)||(50448160-50448233)
chr1 (284-324)||(750239-750278)
chr1 (284-324)||(7447952-7447991)
[»] chr4 (31 HSPs)
chr4 (247-324)||(50052462-50052539)
chr4 (248-324)||(480481-480557)
chr4 (254-324)||(48183083-48183153)
chr4 (258-323)||(6034044-6034109)
chr4 (258-324)||(11511496-11511562)
chr4 (258-324)||(3481654-3481720)
chr4 (258-324)||(41236347-41236413)
chr4 (258-324)||(50526205-50526271)
chr4 (254-323)||(55475187-55475256)
chr4 (256-324)||(24995141-24995209)
chr4 (256-324)||(29239884-29239952)
chr4 (256-324)||(42044401-42044469)
chr4 (249-324)||(29234279-29234354)
chr4 (258-324)||(40574779-40574845)
chr4 (258-324)||(54473567-54473633)
chr4 (255-324)||(23608232-23608301)
chr4 (256-323)||(19670751-19670818)
chr4 (258-324)||(31910192-31910258)
chr4 (251-324)||(29977878-29977951)
chr4 (255-323)||(29547994-29548062)
chr4 (276-323)||(17983778-17983825)
chr4 (256-323)||(32766956-32767023)
chr4 (257-323)||(47986207-47986273)
chr4 (257-323)||(50813927-50813993)
chr4 (258-323)||(55079749-55079814)
chr4 (258-323)||(8343198-8343263)
chr4 (276-323)||(18924530-18924577)
chr4 (257-323)||(44536781-44536846)
chr4 (254-324)||(47104540-47104610)
chr4 (263-324)||(53352600-53352660)
chr4 (274-321)||(29589777-29589823)
[»] chr3 (40 HSPs)
chr3 (255-324)||(11095387-11095456)
chr3 (256-324)||(49607412-49607480)
chr3 (258-324)||(53982011-53982077)
chr3 (255-324)||(54868929-54868998)
chr3 (258-324)||(33644200-33644266)
chr3 (263-324)||(52629305-52629366)
chr3 (256-324)||(27714925-27714993)
chr3 (250-324)||(31456681-31456755)
chr3 (255-324)||(33118885-33118954)
chr3 (256-324)||(36707458-36707526)
chr3 (257-324)||(17470404-17470471)
chr3 (258-324)||(8076393-8076459)
chr3 (258-324)||(26141566-26141632)
chr3 (258-323)||(14623874-14623939)
chr3 (262-324)||(48587125-48587187)
chr3 (256-324)||(11347956-11348024)
chr3 (263-323)||(26754700-26754760)
chr3 (257-324)||(8956761-8956828)
chr3 (257-320)||(24699992-24700055)
chr3 (257-324)||(35536625-35536692)
chr3 (259-324)||(13898089-13898154)
chr3 (262-323)||(30801768-30801829)
chr3 (258-323)||(45058588-45058652)
chr3 (258-324)||(20764949-20765015)
chr3 (254-324)||(35965808-35965878)
chr3 (258-324)||(51419394-51419460)
chr3 (255-324)||(41189798-41189867)
chr3 (255-323)||(11907368-11907436)
chr3 (280-323)||(36331364-36331407)
chr3 (257-320)||(36331416-36331479)
chr3 (258-321)||(41080709-41080771)
chr3 (258-324)||(47531865-47531931)
chr3 (251-324)||(1078345-1078417)
chr3 (251-324)||(21746215-21746290)
chr3 (255-323)||(1758491-1758561)
chr3 (257-324)||(9562998-9563065)
chr3 (261-324)||(25407181-25407245)
chr3 (263-323)||(42823116-42823176)
chr3 (284-324)||(52629955-52629994)
chr3 (284-324)||(53581792-53581831)
[»] chr7 (39 HSPs)
chr7 (255-324)||(7389386-7389455)
chr7 (257-324)||(36361947-36362014)
chr7 (256-324)||(8080417-8080485)
chr7 (257-324)||(3434561-3434628)
chr7 (257-324)||(36362025-36362092)
chr7 (258-324)||(19329842-19329908)
chr7 (258-324)||(35137533-35137599)
chr7 (258-324)||(38267040-38267106)
chr7 (256-324)||(19436221-19436289)
chr7 (256-324)||(38837215-38837283)
chr7 (256-324)||(40957705-40957773)
chr7 (261-324)||(3783998-3784061)
chr7 (258-321)||(4999551-4999614)
chr7 (257-323)||(22343360-22343426)
chr7 (256-324)||(10343597-10343665)
chr7 (256-323)||(38044195-38044262)
chr7 (258-323)||(8238212-8238278)
chr7 (257-323)||(41915740-41915806)
chr7 (258-324)||(46374836-46374902)
chr7 (256-307)||(11044186-11044237)
chr7 (258-324)||(21234401-21234467)
chr7 (258-323)||(32564461-32564526)
chr7 (263-324)||(35522881-35522942)
chr7 (254-323)||(36208169-36208238)
chr7 (256-324)||(18207178-18207246)
chr7 (261-324)||(3694370-3694433)
chr7 (256-319)||(35468894-35468957)
chr7 (257-324)||(46033835-46033902)
chr7 (258-324)||(39255957-39256023)
chr7 (258-319)||(40846152-40846213)
chr7 (258-314)||(31735884-31735940)
chr7 (259-324)||(32951527-32951592)
chr7 (263-322)||(2318279-2318338)
chr7 (256-323)||(7727904-7727971)
chr7 (257-324)||(24000919-24000985)
chr7 (264-323)||(43317571-43317629)
chr7 (249-324)||(45223033-45223108)
chr7 (258-324)||(42538339-42538404)
chr7 (284-324)||(32029751-32029790)
[»] chr5 (28 HSPs)
chr5 (251-324)||(18520918-18520991)
chr5 (256-324)||(36732976-36733044)
chr5 (257-324)||(2740273-2740340)
chr5 (258-324)||(35785199-35785265)
chr5 (250-317)||(36875644-36875711)
chr5 (258-324)||(14831814-14831880)
chr5 (258-324)||(28177775-28177841)
chr5 (258-324)||(33149672-33149738)
chr5 (258-324)||(40145407-40145473)
chr5 (258-324)||(42414336-42414402)
chr5 (256-324)||(13811650-13811718)
chr5 (256-323)||(3921300-3921367)
chr5 (258-324)||(35943926-35943992)
chr5 (257-324)||(6679697-6679764)
chr5 (257-323)||(2252203-2252269)
chr5 (255-324)||(15409644-15409713)
chr5 (258-324)||(26720516-26720582)
chr5 (258-324)||(26990265-26990331)
chr5 (255-321)||(39688934-39689000)
chr5 (263-321)||(10356639-10356698)
chr5 (258-324)||(33825358-33825424)
chr5 (258-324)||(6260035-6260101)
chr5 (278-324)||(16327921-16327967)
chr5 (250-324)||(25914896-25914969)
chr5 (255-324)||(9603810-9603879)
chr5 (256-324)||(31008986-31009054)
chr5 (257-324)||(2614556-2614622)
chr5 (258-319)||(20073555-20073616)
[»] chr8 (34 HSPs)
chr8 (258-324)||(504155-504221)
chr8 (258-324)||(1179974-1180040)
chr8 (258-324)||(12831047-12831113)
chr8 (254-324)||(14547918-14547988)
chr8 (258-324)||(15197333-15197399)
chr8 (248-323)||(16383367-16383442)
chr8 (257-324)||(37038478-37038545)
chr8 (258-324)||(23122631-23122697)
chr8 (258-324)||(34012330-34012396)
chr8 (258-324)||(40423977-40424043)
chr8 (259-324)||(5957831-5957896)
chr8 (256-323)||(34307214-34307281)
chr8 (257-324)||(44507121-44507188)
chr8 (263-324)||(10621121-10621182)
chr8 (248-323)||(30479509-30479584)
chr8 (255-321)||(4854900-4854966)
chr8 (258-324)||(15048216-15048281)
chr8 (258-324)||(20074968-20075034)
chr8 (255-321)||(24307830-24307896)
chr8 (256-321)||(24307627-24307692)
chr8 (256-324)||(10284665-10284733)
chr8 (258-324)||(43414615-43414681)
chr8 (277-324)||(8841466-8841513)
chr8 (257-323)||(32032724-32032789)
chr8 (258-319)||(14055631-14055692)
chr8 (250-323)||(16056436-16056509)
chr8 (256-324)||(42221513-42221581)
chr8 (259-297)||(9122196-9122234)
chr8 (258-323)||(38229429-38229493)
chr8 (257-324)||(11582893-11582959)
chr8 (258-324)||(2547123-2547188)
chr8 (257-323)||(17443824-17443890)
chr8 (255-323)||(15258964-15259032)
chr8 (284-324)||(29705489-29705528)
[»] chr6 (23 HSPs)
chr6 (258-324)||(32869678-32869744)
chr6 (250-323)||(15990077-15990150)
chr6 (261-324)||(22880692-22880755)
chr6 (258-324)||(17598554-17598620)
chr6 (256-323)||(30341395-30341462)
chr6 (257-324)||(11427615-11427684)
chr6 (258-324)||(31109434-31109500)
chr6 (258-323)||(15508059-15508124)
chr6 (256-320)||(6209503-6209567)
chr6 (257-324)||(31976247-31976314)
chr6 (258-324)||(29857827-29857893)
chr6 (258-323)||(31953065-31953130)
chr6 (262-324)||(28536520-28536582)
chr6 (256-324)||(31110795-31110861)
chr6 (256-324)||(15832575-15832643)
chr6 (259-324)||(946377-946442)
chr6 (251-324)||(12732475-12732548)
chr6 (280-324)||(4231570-4231614)
chr6 (256-324)||(23128161-23128229)
chr6 (254-324)||(9698237-9698306)
chr6 (257-323)||(22422053-22422119)
chr6 (284-324)||(7367676-7367715)
chr6 (284-324)||(26669943-26669982)
[»] scaffold0237 (1 HSPs)
scaffold0237 (258-324)||(4029-4095)
[»] scaffold0321 (1 HSPs)
scaffold0321 (256-324)||(10143-10211)
[»] scaffold1268 (1 HSPs)
scaffold1268 (258-324)||(963-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (258-324)||(963-1029)
[»] scaffold0018 (1 HSPs)
scaffold0018 (274-323)||(152514-152563)
[»] scaffold0119 (1 HSPs)
scaffold0119 (284-324)||(812-851)


Alignment Details
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 9058472 - 9058546
Alignment:
Q  250 aaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9058472 aaaaataagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 9058546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 28863444 - 28863521
Alignment:
Q  246 caataaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28863444 caataaaaata-gaataatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 28863521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 33436202 - 33436134
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33436202 aagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacac 33436134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 7465836 - 7465769
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7465836 agagtaatgatacatagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacac 7465769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 10249487 - 10249416
Alignment:
Q  253 aataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  10249487 aataagagtaatgatacatagacacccttaggtgacaatacaccttttgacacccacacaaaaatctgacac 10249416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 17473020 - 17473086
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17473020 gagtaatgatacatagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacac 17473086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 40701478 - 40701544
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40701478 gagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacac 40701544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 30915461 - 30915529
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  30915461 aagagtaatgatacatagacacccttaggtggcaatacaccctttgacccccacataaaaatctgacac 30915529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 5574589 - 5574522
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  5574589 agagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacac 5574522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 19930917 - 19930854
Alignment:
Q  261 taatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19930917 taatgatacatagacacccttaggtggcaatacaccctttgacatccacacaaaaatctgacac 19930854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 32505749 - 32505682
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  32505749 agagtaatgatacatagacacccttaggtgacaatacaccttttgacacccacacaaaaatctgacac 32505682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 13438343 - 13438409
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  13438343 gagtaatgatacatagacacccttaggtgacaatacatcctttgacacccacacaaaaatctgacac 13438409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 27864704 - 27864770
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  27864704 gagtaatgatacatagacacccttatgtggcaatacaccctttgacatccacacaaaaatctgacac 27864770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 28381755 - 28381689
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  28381755 gagtaatgatacatagacacccttaggtggcaatacacctttcgacacccacacaaaaatctgacac 28381689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 40614002 - 40613936
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40614002 gagttatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 40613936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 38882915 - 38882848
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  38882915 aagagtaatgatacatagacacccttaggtggcaata-accctttgacatccacacaaaaatctgacac 38882848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 4060685 - 4060751
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||    
T  4060685 gagtaatgatacatagacacccttaggtgacaatacaccttttgacatccacacaaaaatctgacac 4060751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 20700813 - 20700881
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| |||| ||||| |||||||||||||||||||| || |||||||||||||||||    
T  20700813 aagagtaatgatacatagacatccttatgtggcaatacaccctttgactcctacacaaaaatctgacac 20700881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 26891606 - 26891539
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||| ||||||||| | ||||||||||||||||||||||| | |||||||||||||||||||||||    
T  26891606 aagagttatgatacatagccacccttaggtggcaatacacccctagacacccacacaaaaatctgaca 26891539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 33436210 - 33436277
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| |||| |||||| |||||||||||| ||||||||||||| |||||||||||||    
T  33436210 agagtaatgatacatagacatccttagatggcaatacaccttttgacacccacataaaaatctgacac 33436277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 43490112 - 43490186
Alignment:
Q  250 aaaaataa-gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||||| |||| |||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  43490112 aaaaataatgagttatgatacataaacacccttaggtgacaatacaccccttgacacccacacaaaaatctgaca 43490186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 38273244 - 38273176
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||| ||||||||| ||||  ||||| |||||||||||||||| |||||||||||||||||||||||    
T  38273244 aagagttatgatacatagacattcttagatggcaatacaccctttaacacccacacaaaaatctgacac 38273176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 2997569 - 2997522
Alignment:
Q  276 acccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  2997569 acccttaggtggcaatacaccccttgacacccacacaaaaatctgaca 2997522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 17820104 - 17820039
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||| ||||||||| |||| |  ||||||||||||||||| |||||||||||||||||||||||||    
T  17820104 gagttatgatacatagacaactataggtggcaatacaccccttgacacccacacaaaaatctgaca 17820039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 42257182 - 42257259
Alignment:
Q  247 aataaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||| | |||||| ||||||||| |||| | ||||||||||||||| | ||||||||||||| |||||||||||||    
T  42257182 aataaataaaagagttatgatacatagacatctttaggtggcaatacatcatttgacacccacataaaaatctgacac 42257259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 2533123 - 2533189
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||| ||||||||| |||| ||||| ||||||||||| ||||||||| |||||||||||||||||||    
T  2533123 agagttatgatacatagacatccttaagtggcaatacatcctttgaca-ccacacaaaaatctgacac 2533189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 45097837 - 45097770
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||| |||||||||  ||| ||||||||||||||||| || |||||||||| ||||||||||||||    
T  45097837 aagagttatgatacataaacatccttaggtggcaatacatcccttgacacccatacaaaaatctgaca 45097770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 13365341 - 13365418
Alignment:
Q  248 ataaaaataagagtaatgatacatggacac--ccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||||| |||||| |||||||||  ||||  |||||| |||||||| |||| |||||||||||||||||||||||||    
T  13365341 ataaaaaaaagagttatgatacataaacacacccttagatggcaatataccccttgacacccacacaaaaatctgaca 13365418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 17823781 - 17823850
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||||  ||| |||||||||||||||||  | |  |||||||||||||||||||||||    
T  17823781 taagagtaatgatacatatacatccttaggtggcaatacattcctgaacacccacacaaaaatctgacac 17823850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 38732354 - 38732419
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||| |||||||||  ||||||||| ||| ||||||| || |||||||||||||||||||||||||    
T  38732354 gagttatgatacataaacacccttatgtgacaatacatcccttgacacccacacaaaaatctgaca 38732419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 41575138 - 41575202
Alignment:
Q  259 agtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||||||||||| |||| |||||| ||| ||||||||||||||||  ||||||||||| |||||    
T  41575138 agtaatgatacatagacatccttagatggtaatacaccctttgacattcacacaaaaatttgaca 41575202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 3439985 - 3440040
Alignment:
Q  264 tgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatct 319  Q
    |||||| | ||||||||||||||||||||||| | | |||||||||||||||||||    
T  3439985 tgatacgtagacacccttaggtggcaatacactcctggacacccacacaaaaatct 3440040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 15428851 - 15428775
Alignment:
Q  247 aataaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||| ||| |||||| |||||||||  ||| ||||| ||||| |||||||| || |||| |||||||||||||||||    
T  15428851 aatagaaacaagagttatgatacataaacatccttatgtggccatacaccccttaacactcacacaaaaatctgaca 15428775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 36168835 - 36168902
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||| ||||||||| |||| |||||| || ||||||| ||||| || ||||||||||||| ||||||    
T  36168835 agagttatgatacatagacatccttagatgacaatacatcctttaactcccacacaaaaatttgacac 36168902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 16096914 - 16096875
Alignment:
Q  284 gtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  16096914 gtggcaatacacccttt-acacccacacaaaattctgacac 16096875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 42026960 - 42026897
Alignment:
Q  259 agtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||||||||||| |||||   | |||||||||||||| || |||||||||||||| |||||||    
T  42026960 agtaatgatacatgtacacctccatgtggcaatacacccctt-acacccacacaaaattctgaca 42026897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 42849793 - 42849832
Alignment:
Q  284 gtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  42849793 gtggcaatacacccttt-acacccacacaaaattctgacac 42849832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 52132988 - 52133119
Alignment:
Q  5 gataagaacaatacactaacgaccacatttaaggaaaattaatcattccgaatgaagtagaaagcatctagcaaaatcagaaagcaacgagcacataata 104  Q
    ||||||||||| ||| ||   |||||||||||| ||||| |||| |||||||||||| ||||| |||| | ||||||||||||||||||| ||||| |||    
T  52132988 gataagaacaacacagtaggaaccacatttaagcaaaataaatccttccgaatgaagcagaaaccatcgaacaaaatcagaaagcaacgaccacattata 52133087  T
Q  105 aaaaccaaaatacattgacatctcaagagttt 136  Q
    ||||||||||||||||||| ||| ||||||||    
T  52133088 aaaaccaaaatacattgacctcttaagagttt 52133119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 2581913 - 2581981
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2581913 aagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 2581981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 9474976 - 9474910
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9474976 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 9474910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 3000319 - 3000385
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3000319 gagtaatgatacataaacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 3000385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 38595152 - 38595220
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38595152 aagagtaatgatacataaacacctttaggtggcaatacaccctttgacacccacacaaaaatctgacac 38595220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 51898784 - 51898717
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  51898784 agagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacac 51898717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 8346496 - 8346422
Alignment:
Q  250 aaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||| |||||||||||||||| | |||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  8346496 aaaaaaaagagtaatgatacatagtcacctttaggtggcaatacaccatttgacacccacacaaaaatctgacac 8346422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 27564835 - 27564769
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  27564835 gagtaatgatacatagacatccttaggtggcaatacaccttttgacacccacacaaaaatctgacac 27564769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 47452420 - 47452354
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  47452420 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatctaacac 47452354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 48716382 - 48716316
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  48716382 gagtaatgatacatagacacccttaggtggcaatacaccatttgacatccacacaaaaatctgacac 48716316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 52133174 - 52133240
Alignment:
Q  192 cactggtcaggacagt-ttggattgcaaagaagctttaagtaacttgatgccctgcaataaaaataa 257  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52133174 cactggtcaggacagtcttggattgcaaagaagctttaagtaacttgatgccctgtaataaaaataa 52133240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 32813245 - 32813313
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  32813245 aagagttatgatacatagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacac 32813313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 38632423 - 38632355
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||    
T  38632423 aagagtaatgatacatagacacccttaggtggcaatacaccttttaacatccacacaaaaatctgacac 38632355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 37649198 - 37649264
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||| | |||||||||||||||| ||||||||||||||||||||||||||||    
T  37649198 gagtaatgatacatagacatctttaggtggcaatacactctttgacacccacacaaaaatctgacac 37649264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 50591100 - 50591035
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  50591100 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgaca 50591035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 248 - 324
Target Start/End: Original strand, 26274422 - 26274498
Alignment:
Q  248 ataaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||||| | ||||||| ||||| |||||||||||||    
T  26274422 ataaaaataagaataatgatacatagacacccttatgtggcaatacatcatttgacatccacagaaaaatctgacac 26274498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 41758804 - 41758871
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| |||||| |||  |||||||||||||||||||| |||||||||||||||||||    
T  41758804 agagtaatgatacatagacaccattaaatggcaatacaccctttgacaaccacacaaaaatctgacac 41758871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 50630457 - 50630524
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||  |||||||||||||||||||||    
T  50630457 agagtaatgatacatagatacccttaggtggcaatacatcctttgttacccacacaaaaatctgacac 50630524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 23597193 - 23597125
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| |||| | |||||||||||||||| |||||| ||||||| |||||||||||||    
T  23597193 aagagtaatgatacatagacatcattaggtggcaatacactctttgatacccacataaaaatctgacac 23597125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 5959102 - 5959035
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||| |||||||||  ||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  5959102 aagagttatgatacataaacacccttaagtggcaatacacctcttgacacccacacaaaaatctgaca 5959035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 44548473 - 44548410
Alignment:
Q  261 taatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||| |||| | ||||||||||||||||| ||||| |||||||||||||||||||||    
T  44548473 taatgatacatagacatctttaggtggcaatacaccatttgatacccacacaaaaatctgacac 44548410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 43132 - 43198
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| ||||  |||||| | ||||||| |||||||||||||||||||||||||||||    
T  43132 gagtaatgatacatagacagtcttaggagacaatacatcctttgacacccacacaaaaatctgacac 43198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 49811631 - 49811561
Alignment:
Q  254 ataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||| |||||| || |||| ||||||||| ||||||||| ||||||| |||||||||||||||||||    
T  49811631 ataagagttatgatagatagacatccttaggtgacaatacaccatttgacatccacacaaaaatctgacac 49811561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 11152476 - 11152412
Alignment:
Q  259 agtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||| |||| |||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  11152476 agtaatgaaacatagacacc-ttaggtggcaatacacccttcgacatccacacaaaaatctgacac 11152412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 41608593 - 41608528
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||| |||||||||  ||| |||||||||||||||||||| ||||||| |||||||||||||||||    
T  41608593 gagttatgatacataaacatccttaggtggcaatacaccccttgacactcacacaaaaatctgaca 41608528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 45044640 - 45044595
Alignment:
Q  278 ccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||    
T  45044640 ccttaggtggcaatacaccatttgacacccatacaaaaatctgaca 45044595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 26440749 - 26440800
Alignment:
Q  273 gacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| |||||| || ||||||||||||| |||||||||||||||||||||||    
T  26440749 gacatccttagatgacaatacaccctttaacacccacacaaaaatctgacac 26440800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 47748443 - 47748507
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||| |||||||||  | |||||||||||||||||||||| |||||||||| | ||||||||||||    
T  47748443 gagttatgatacataaatacccttaggtggcaatacaccc-ttgacacccatataaaaatctgaca 47748507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 13414791 - 13414827
Alignment:
Q  288 caatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||||||||||||||||||| ||||    
T  13414791 caatacaccctttgacacccacacaaaaatctaacac 13414827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 44453984 - 44454044
Alignment:
Q  263 atgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||||||| |||||| ||| ||||||||||| |  |||| ||||||||||||||||||||    
T  44453984 atgatacatagacacctttaagtggcaatacatctcttgatacccacacaaaaatctgaca 44454044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 4401521 - 4401455
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||| |||||||||| ||  || || ||||||||||||||||| |||||||||||||| ||||||||    
T  4401521 agagtgatgatacatgtaccaccctatgtggcaatacacccttt-acacccacacaaaattctgacac 4401455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 37926539 - 37926472
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||| ||||||||| || | | ||||||||||||||| | ||| ||||||||| |||||||||||||    
T  37926539 agagttatgatacatagatatctttaggtggcaatacatcttttaacacccacataaaaatctgacac 37926472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 3302633 - 3302567
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||  ||| ||||||||| ||||| |  | | ||||||||||||||||||||||||    
T  3302633 gagtaatgatacatatacatccttaggtgacaatatattcctggacacccacacaaaaatctgacac 3302567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 50448160 - 50448233
Alignment:
Q  250 aaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||| ||||| |||||||||| ||  ||  | ||||||||||||||||| |||||||||||||| ||||||||    
T  50448160 aaaaattagagtgatgatacatgtaccaccccatgtggcaatacacccttt-acacccacacaaaattctgacac 50448233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 750239 - 750278
Alignment:
Q  284 gtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  750239 gtggcaatacacccttt-acacccacacaaaattctgacac 750278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 7447991 - 7447952
Alignment:
Q  284 gtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  7447991 gtggcaatacacccttt-acacccacacaaaattctgacac 7447952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 50052539 - 50052462
Alignment:
Q  247 aataaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50052539 aataaaaaaaagagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 50052462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 248 - 324
Target Start/End: Complemental strand, 480557 - 480481
Alignment:
Q  248 ataaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  480557 ataaaaaaaagagtaatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacac 480481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 48183153 - 48183083
Alignment:
Q  254 ataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48183153 ataagagtaatgatacatagacacccttacgtggcaatacaccctttgacacccacacaaaaatctgacac 48183083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 6034044 - 6034109
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6034044 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 6034109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 11511562 - 11511496
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11511562 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacataaaaatctgacac 11511496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 3481654 - 3481720
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  3481654 gagtaatgatacatagacacctttaggtggcaatacactctttgacacccacacaaaaatctgacac 3481720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 41236347 - 41236413
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  41236347 gagtaatgatacatagacacccttaggtggcaatacaccttttgacatccacacaaaaatctgacac 41236413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 50526271 - 50526205
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  50526271 gagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacac 50526205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 55475187 - 55475256
Alignment:
Q  254 ataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||||| |||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  55475187 ataagagttatgatacataaacatccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 55475256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 24995209 - 24995141
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||    
T  24995209 aagagtaatgatatatggacacccttagatggcaatacaccctttgacacccacataaaaatttgacac 24995141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 29239884 - 29239952
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  29239884 aagagtaatgatacatagacacccttaggtggcaatacaccatttgacatccacacaaaaatctaacac 29239952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 42044469 - 42044401
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| |||||||||||||||||||||| ||||  |||||||||||||||||||||||    
T  42044469 aagagtaatgatacatagacacccttaggtggcaatacatccttgtacacccacacaaaaatctgacac 42044401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 29234354 - 29234279
Alignment:
Q  249 taaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||||||||||||| |||  ||||||||||||||||    
T  29234354 taaaaattagagtaatgatacatagacacccttagatggcaatacaccctttgataccttcacaaaaatctgacac 29234279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 40574779 - 40574845
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  40574779 gagttatgatacatagacatccttaggtggtaatacaccctttgacacccacacaaaaatctgacac 40574845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 54473633 - 54473567
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  54473633 gagtaatgatacatagacacccttaggtgacaatacaccatttgacacccacacaaaaatctaacac 54473567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 23608232 - 23608301
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| || ||||||||||| || ||||||||| |||||||||||||||||||||||||||    
T  23608232 taagagtaatgatatatagacacccttagatgacaatacaccatttgacacccacacaaaaatctgacac 23608301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 19670818 - 19670751
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||| |||||||||  |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  19670818 aagagttatgatacataaacacccttaggtggcaatacaccccttgacactcacacaaaaatctgaca 19670751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 31910192 - 31910258
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  31910192 gagttatgatacatagacatccttaggtgacaatacactctttgacacccacacaaaaatctgacac 31910258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 29977878 - 29977951
Alignment:
Q  251 aaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||||||||  | | || ||||||||||||||||| || |||||||||||||||||||||||    
T  29977878 aaaataagagtaatgatacatacagaaccataggtggcaatacaccccttaacacccacacaaaaatctgacac 29977951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 29548062 - 29547994
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||||| |||||||||  ||| ||||||||||||||||| || |||||||||||||||||||||||||    
T  29548062 taagagttatgatacataaacatccttaggtggcaatacatcccttgacacccacacaaaaatctgaca 29547994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 17983825 - 17983778
Alignment:
Q  276 acccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  17983825 acccttaggtggcaatacaccccttgacacccacacaaaaatctgaca 17983778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 32766956 - 32767023
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||| |||||||||  |||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  32766956 aagagttatgatacataaacactcttaggtggcaatacaccccttgacacccatacaaaaatctgaca 32767023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 47986207 - 47986273
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||| |||||||||  ||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  47986207 agagttatgatacataaacacccttaggtggcaatacatcccttgacatccacacaaaaatctgaca 47986273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 50813993 - 50813927
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||| |||||||||  |||| ||||||||| ||||||||| |||||||||||||||||||||||||    
T  50813993 agagttatgatacataaacactcttaggtggtaatacaccccttgacacccacacaaaaatctgaca 50813927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 55079814 - 55079749
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||| |||||||||  |||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  55079814 gagttatgatacataaacacccttaggtggcaatacacctcttgacacccatacaaaaatctgaca 55079749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 8343263 - 8343198
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||| |||||||||  ||| ||||||||||||||||| ||||||||||| ||| ||||||||||||    
T  8343263 gagttatgatacataaacatccttaggtggcaatacatcctttgacacctacataaaaatctgaca 8343198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 18924577 - 18924530
Alignment:
Q  276 acccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||||||||||||||||||| |||| | ||||||||||||||||||    
T  18924577 acccttaggtggcaatacaccccttgatatccacacaaaaatctgaca 18924530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 44536846 - 44536781
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||| |||||||||  ||||  |||||||||||||||||| |||||| ||||||||||||||||||    
T  44536846 agagttatgatacataaacacttttaggtggcaatacaccc-ttgacatccacacaaaaatctgaca 44536781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 47104540 - 47104610
Alignment:
Q  254 ataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| || ||||  ||||| || |||||||| || |||||||||||||||||| ||||||    
T  47104540 ataagagtaatgatatatagacattcttagatgacaatacactctctgacacccacacaaaaatttgacac 47104610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 53352660 - 53352600
Alignment:
Q  263 atgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||| |||||||||||||| |||||||  |||| ||||| |||||||||||||||||    
T  53352660 atgatacatagacacccttaggtg-caatacattctttaacacctacacaaaaatctgacac 53352600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 29589823 - 29589777
Alignment:
Q  274 acacccttaggtggcaatacaccctttgacacccacacaaaaatctga 321  Q
    |||||||||| || |||||||||| |||||||||||||||||||||||    
T  29589823 acacccttagttg-caatacaccccttgacacccacacaaaaatctga 29589777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 11095456 - 11095387
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11095456 taagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 11095387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 49607412 - 49607480
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49607412 aagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 49607480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 53982011 - 53982077
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53982011 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 53982077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 54868998 - 54868929
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  54868998 taagagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacac 54868929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 33644200 - 33644266
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33644200 gagtaatgatacatagacacccttgggtggcaatacaccctttgacacccacacaaaaatctgacac 33644266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 52629305 - 52629366
Alignment:
Q  263 atgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52629305 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 52629366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 27714993 - 27714925
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  27714993 aagagtaatgatacatagacacctttaggtggtaatacaccctttgacacccacacaaaaatctgacac 27714925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 31456681 - 31456755
Alignment:
Q  250 aaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||| || ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  31456681 aaaaaaaaaagtaatgatacatagacacccataggcggcaatacaccctttgacacccacacaaaaatctgacac 31456755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 33118954 - 33118885
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  33118954 taagagttatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatttgacac 33118885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 36707526 - 36707458
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  36707526 aagagtaatgatacatagatacccttaggtgacaatacaccctttgacatccacacaaaaatctgacac 36707458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 17470404 - 17470471
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  17470404 agagtaatgatacatagacacctttaggtggcaatacaccttttaacacccacacaaaaatctgacac 17470471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 8076393 - 8076459
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  8076393 gagtaatgatacataaacacccttaggtggcagtacaccctttgacacccacacaaaaatctaacac 8076459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 26141632 - 26141566
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  26141632 gagttatgatacatagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacac 26141566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 14623939 - 14623874
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||||||||||    
T  14623939 gagtaatgatacatagacatccttaggtggcaatacaccccttgacacccacataaaaatctgaca 14623874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 48587187 - 48587125
Alignment:
Q  262 aatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||| || ||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  48587187 aatgatacatagatacccttaggtggcaatacaccctttgacacctacataaaaatctgacac 48587125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 11348024 - 11347956
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||| ||||||||| |||| ||||||||| ||||||| ||||||||| |||||||||||||||||||    
T  11348024 aagagttatgatacatagacatccttaggtgacaatacatcctttgacatccacacaaaaatctgacac 11347956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 26754700 - 26754760
Alignment:
Q  263 atgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  26754700 atgattcatagacacccttaggtggcaatacacccttggacatccacacaaaaatctgaca 26754760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 8956761 - 8956828
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||| |||||| ||||||    
T  8956761 agagtaatgatacatagacatccttatgtggcaatacatcctttgacacccacataaaaatgtgacac 8956828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 24700055 - 24699992
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctg 320  Q
    ||||||||||||||| |||| |||||| |||||||||||| ||||||||||||| |||||||||    
T  24700055 agagtaatgatacatagacatccttagttggcaatacaccttttgacacccacataaaaatctg 24699992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 35536625 - 35536692
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| |||| ||||| ||||||||||||| ||||||||||||| |||||| ||||||    
T  35536625 agagtaatgatacatagacatccttatgtggcaatacaccatttgacacccacataaaaatgtgacac 35536692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 13898154 - 13898089
Alignment:
Q  259 agtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||| ||  ||| |||||||||||||||||||| |||||||||||| |||||||||||||    
T  13898154 agtaatgatagataaacatccttaggtggcaatacaccccttgacacccacataaaaatctgacac 13898089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 30801829 - 30801768
Alignment:
Q  262 aatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||||||| ||||||||||||||  |||||||||||||| |||||||||||||| |||||    
T  30801829 aatgatacatagacacccttaggtgataatacaccctttgatacccacacaaaaatatgaca 30801768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 45058652 - 45058588
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||| |||||||||  |||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  45058652 gagttatgatacataaacacccttaggtggcaatacaccc-ttgacacccacataaaaatctgaca 45058588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 20765015 - 20764949
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| |||| |||| |||| |||||||||| ||||||| |||| |||||||||||||||||||||||    
T  20765015 gagttatgagacatagacatccttaggtggtaatacactctttaacacccacacaaaaatctgacac 20764949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 35965878 - 35965808
Alignment:
Q  254 ataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||||  ||| ||||| |||  |||||| ||||||||||||||| |||||||||||||    
T  35965878 ataagagtaatgatacatatacatccttaagtgataatacatcctttgacacccacataaaaatctgacac 35965808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 51419460 - 51419394
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||| |||||| || ||||||| ||||| |||||||||||||||||||||||    
T  51419460 gagttatgatacatagacatccttagatgacaatacatcctttaacacccacacaaaaatctgacac 51419394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 41189867 - 41189798
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||| |||||||||  ||| ||||||||||||||||| | ||||||||||||| |||||| ||||||    
T  41189867 taagagttatgatacatatacatccttaggtggcaatacatcatttgacacccacataaaaatttgacac 41189798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 11907368 - 11907436
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||||| ||||||||| |||||||||||||| |||||||| | |  |||| |||||||||||||||||    
T  11907368 taagagttatgatacatagacacccttaggtgacaatacacacctgaacactcacacaaaaatctgaca 11907436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 323
Target Start/End: Complemental strand, 36331407 - 36331364
Alignment:
Q  280 ttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||||||||| ||||| |||||||||||||||||||||||||    
T  36331407 ttaggtggcaatgcaccccttgacacccacacaaaaatctgaca 36331364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 36331479 - 36331416
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctg 320  Q
    ||||| |||||||||  |||||||||| ||||||| ||||| |||||| |||||||||||||||    
T  36331479 agagttatgatacataaacacccttagatggcaatgcaccccttgacatccacacaaaaatctg 36331416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 41080709 - 41080771
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctga 321  Q
    |||||||||||||| |||| |||||| | |||| |||||||||||||||||| |||||||||||    
T  41080709 gagtaatgatacatagacatccttag-tagcaaaacaccctttgacacccacgcaaaaatctga 41080771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 47531865 - 47531931
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||| |||||| |||||||||||| ||| ||| |||||||| ||||||||||    
T  47531865 gagttatgatacatagacatccttagatggcaatacaccttttaacatccacacaagaatctgacac 47531931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 1078417 - 1078345
Alignment:
Q  251 aaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||| |||||||||| ||  ||| | ||||||||||||||||| ||| |||||||||| ||||||||    
T  1078417 aaaataagagtgatgatacatgtaccacctcatgtggcaatacacccttt-acatccacacaaaattctgacac 1078345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 21746290 - 21746215
Alignment:
Q  251 aaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgaca--cccacacaaaaatctgacac 324  Q
    ||||| |||||||||||||||  ||| |||||||||||||||||  | | ||||  ||||||||||||||||||||    
T  21746290 aaaattagagtaatgatacatatacatccttaggtggcaatacattcctggacacccccacacaaaaatctgacac 21746215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 1758561 - 1758491
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccct--ttgacacccacacaaaaatctgaca 323  Q
    ||||||| ||||||||| | || || ||||| |||||||||||   |||||||||||||||||||||||||    
T  1758561 taagagttatgatacatagtcaaccataggttgcaatacaccccccttgacacccacacaaaaatctgaca 1758491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 9562998 - 9563065
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||  ||||| |||| || ||||||| ||||||||| ||| | |||||||||||||    
T  9562998 agagtaatgatacataaacaccattagatgacaatacaacctttgacatccatataaaaatctgacac 9563065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 25407245 - 25407181
Alignment:
Q  261 taatgatacatggacacccttaggtggcaatacaccctttgacacccacac-aaaaatctgacac 324  Q
    |||||||||||  ||| || |||||||||||| |||| ||||||| ||||| |||||||||||||    
T  25407245 taatgatacatacacaaccataggtggcaatataccccttgacacacacacaaaaaatctgacac 25407181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 42823116 - 42823176
Alignment:
Q  263 atgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||||||  ||||| ||| |||| ||||||||| |||||||||||| |||||| |||||    
T  42823116 atgatacataaacaccattatgtggtaatacaccccttgacacccacaaaaaaatttgaca 42823176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 52629994 - 52629955
Alignment:
Q  284 gtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  52629994 gtggcaatacacccttt-acacccacacaaaattctgacac 52629955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 53581792 - 53581831
Alignment:
Q  284 gtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  53581792 gtggcaatacacccttt-acacccacacaaaattctgacac 53581831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 7389386 - 7389455
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7389386 taagagtaatgatacatagacacccttaggtggcaatacactctttgacacccacacaaaaatctgacac 7389455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 36362014 - 36361947
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36362014 agagtaatgatacatagacacccttaggtggcaatacatcctttgacacccacacaaaaatctgacac 36361947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 8080485 - 8080417
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  8080485 aagagtaatgatacatagacacccttaggtggcaatacaccctttgacacctacataaaaatctgacac 8080417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 3434561 - 3434628
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  3434561 agagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaaactgacac 3434628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 36362025 - 36362092
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  36362025 agagtaatgatacatagacacccttaggtggtaatacatcctttgacacccacacaaaaatctgacac 36362092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 19329842 - 19329908
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  19329842 gagtaatgatacatagacatccttaggtggcaatacaccttttgacacccacacaaaaatctgacac 19329908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 35137533 - 35137599
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35137533 gagtaatgataaatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacac 35137599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 38267040 - 38267106
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  38267040 gagtaatgatacatagacacccttatgtgacaatacaccctttgacacccacacaaaaatctgacac 38267106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 19436289 - 19436221
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| |||| ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  19436289 aagagtaatgatacatagacatccttaggtgacaatacaccttttgacacccacacaaaaatctgacac 19436221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 38837215 - 38837283
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| |||||||||||||||||||||||||||  ||||| |||||||||||||||||    
T  38837215 aagagtaatgatacatagacacccttaggtggcaatacacccttgtacacctacacaaaaatctgacac 38837283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 40957705 - 40957773
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||||    
T  40957705 aagagtaatgatacatagacactcttaggtggcaatacactctttgatacccacacaaaaatctgacac 40957773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 3783998 - 3784061
Alignment:
Q  261 taatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  3783998 taatgatacatagacacccttaggtggcaatacatcttttgacacccacacaaaaatctgacac 3784061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 4999614 - 4999551
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctga 321  Q
    |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  4999614 gagtaatgatacatagacacccttagatggcaatacaccttttgacacccacacaaaaatctga 4999551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 22343360 - 22343426
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22343360 agagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgaca 22343426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 10343665 - 10343597
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| ||||||||||||||| |||||||   ||||||||||||||||||||||||||    
T  10343665 aagagtaatgatacatagacacccttaggtggaaatacacatcttgacacccacacaaaaatctgacac 10343597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 38044195 - 38044262
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||| |||||||||  |||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  38044195 aagagttatgatacataaacacccttaggtggcaatacaccccttgacatccacacaaaaatctgaca 38044262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 8238212 - 8238278
Alignment:
Q  258 gagtaatgatacatggacaccct-taggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||| |||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8238212 gagttatgatacataaacaccctgtaggtggcaatacaccctttgacacccacacaaaaatctgaca 8238278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 41915740 - 41915806
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||| |||||||||  |||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  41915740 agagttatgatacataaacacccttaggtggcaatacaccccttgacacctacacaaaaatctgaca 41915806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 46374902 - 46374836
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||| ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  46374902 gagttatgatacatagacatccttaggtggcaacacaccctttaacacccacacaaaaatctgacac 46374836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 11044186 - 11044237
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacaccc 307  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  11044186 aagagtaatgatacatagacacccttaggtggcaatacatcctttgacaccc 11044237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 21234401 - 21234467
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||| ||||||||| |||||||||||||||||| ||||||||||| ||||||    
T  21234401 gagttatgatacatagacatccttaggtgacaatacaccctttgacactcacacaaaaatttgacac 21234467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 32564526 - 32564461
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||| |||||||||  |||  ||||||||||||||||||| |||||||||||||||||||||||||    
T  32564526 gagttatgatacataaacattcttaggtggcaatacaccccttgacacccacacaaaaatctgaca 32564461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 35522881 - 35522942
Alignment:
Q  263 atgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||||    
T  35522881 atgatacatagacatccttaagtggcaatacaccatttaacacccacacaaaaatctgacac 35522942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 36208169 - 36208238
Alignment:
Q  254 ataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||||| ||||||||| ||||||||||||||| ||||||  | |||||||||||||||||| ||||||    
T  36208169 ataagagttatgatacatagacacccttaggtggtaatacattcattgacacccacacaaaaagctgaca 36208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 18207178 - 18207246
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||| ||||||||| |||| |||||||||||||||||||  |||||||||| |||||||||| ||||    
T  18207178 aagagttatgatacatagacaaccttaggtggcaatacacctcttgacacccatacaaaaatctaacac 18207246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 3694370 - 3694433
Alignment:
Q  261 taatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||| ||  ||||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  3694370 taatgatatatacacacccttaggtgacaatacaccttttaacacccacacaaaaatctgacac 3694433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 35468957 - 35468894
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatct 319  Q
    |||||||||||||||| |||| |||||| |||||||||| | ||||||||||||| ||||||||    
T  35468957 aagagtaatgatacatagacatccttagatggcaatacatcatttgacacccacataaaaatct 35468894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 46033902 - 46033835
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||| ||||||||| || |  |||||||||||||||||||||| ||||||||| |||||||||||||    
T  46033902 agagttatgatacatagatattcttaggtggcaatacaccctttaacacccacataaaaatctgacac 46033835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 39256023 - 39255957
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||| |||||||||||||||||||  |||| ||||| |||||||||||||||    
T  39256023 gagttatgatacatagacaaccttaggtggcaatacaccacttgatacccatacaaaaatctgacac 39255957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 40846213 - 40846152
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatct 319  Q
    |||| |||||||||  ||| |||||||||||||||||||| |||||| ||||||||||||||    
T  40846213 gagttatgatacataaacatccttaggtggcaatacaccccttgacatccacacaaaaatct 40846152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 31735884 - 31735940
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaa 314  Q
    |||| ||||||||| |||| |||||||||||||||||| |||| |||||||||||||    
T  31735884 gagttatgatacatagacatccttaggtggcaatacactctttaacacccacacaaa 31735940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 32951592 - 32951527
Alignment:
Q  259 agtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||| ||||| ||||| || ||||||| ||||| ||| |||||||||||||| ||||    
T  32951592 agtaatgatacatagacactcttagatgacaatacatcctttaacatccacacaaaaatctaacac 32951527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 2318338 - 2318279
Alignment:
Q  263 atgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgac 322  Q
    |||||||||  ||| || |||||||||| |||||  ||||||||||||||||||||||||    
T  2318338 atgatacattaacaaccataggtggcaagacacctcttgacacccacacaaaaatctgac 2318279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 7727904 - 7727971
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||| |||||||||  |||||||||||||| ||||||||  ||||||  |||| ||||||||||||    
T  7727904 aagagttatgatacataaacacccttaggtggtaatacacctcttgacattcacataaaaatctgaca 7727971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 24000919 - 24000985
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| ||  ||| | ||||||||||||||||| ||||||| |||||| ||||||||    
T  24000919 agagtaatgatacatgtaccacctcatgtggcaatacacccttt-acacccatacaaaattctgacac 24000985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 43317629 - 43317571
Alignment:
Q  264 tgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||||||| ||||||||  |||||||||||||| || |||||||||||||| |||||||    
T  43317629 tgatacatgtacacccttgtgtggcaatacacccctt-acacccacacaaaattctgaca 43317571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 45223033 - 45223108
Alignment:
Q  249 taaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||| ||||||||||||| ||  ||| |||||||||||||||||  |||  ||| | |||||||||||||||||    
T  45223033 taaaaaaaagagtaatgatatatatacatccttaggtggcaatacattcttgaacatctacacaaaaatctgacac 45223108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 42538339 - 42538404
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| ||  ||| | ||||||||||||||||| ||||||| |||||| ||||||||    
T  42538339 gagtaatgatacatgtaccacctcatgtggcaatacacccttt-acacccatacaaaattctgacac 42538404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 32029751 - 32029790
Alignment:
Q  284 gtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  32029751 gtggcaatacacccttt-acacccacacaaaattctgacac 32029790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 18520991 - 18520918
Alignment:
Q  251 aaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18520991 aaaaaaagaataatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 18520918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 36733044 - 36732976
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36733044 aagagtaatgatacatagacacccttaggtagcaatacaccctttgacacccacacaaaaatctgacac 36732976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 2740273 - 2740340
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2740273 agagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 2740340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 35785199 - 35785265
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35785199 gagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacac 35785265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 250 - 317
Target Start/End: Complemental strand, 36875711 - 36875644
Alignment:
Q  250 aaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaat 317  Q
    ||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36875711 aaaaaaaaaagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaat 36875644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 14831814 - 14831880
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  14831814 gagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacac 14831880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 28177775 - 28177841
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28177775 gagttatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 28177841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 33149738 - 33149672
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  33149738 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacac 33149672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 40145407 - 40145473
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  40145407 gagtaatgatacatagacacccttaggtggcaatacaccctttaacatccacacaaaaatctgacac 40145473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 42414402 - 42414336
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  42414402 gagtaatgatacatagacaccagtaggtggcaatacaccctttgacacccacacaaaaatctgacac 42414336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 13811650 - 13811718
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||| ||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  13811650 aagagtaaagatacatagacacccttaggtggcaatacatcatttgacacccacacaaaaatctgacac 13811718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 3921367 - 3921300
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3921367 aagagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgaca 3921300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 35943992 - 35943926
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  35943992 gagttatgatacatagacacccttaggtggcaatacatcatttgacacccacacaaaaatctgacac 35943926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 6679697 - 6679764
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||| ||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||||||||    
T  6679697 agagttatgatacatagacatctttaggtggcaatacaccttttgacacccacacaaaaatctgacac 6679764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 2252269 - 2252203
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||| |||||||||  ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  2252269 agagttatgatacataaacatccttaggtggcaatacaccccttgacacccacacaaaaatctgaca 2252203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 15409713 - 15409644
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||| ||||||||| |||| ||||||||| |||||||  ||||||||||||||||||||||||||||    
T  15409713 taagagttatgatacatagacatccttaggtgacaatacattctttgacacccacacaaaaatctgacac 15409644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 26720516 - 26720582
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||| ||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  26720516 gagttatgatacatagacatccttaggtggcaatacaccctttaacacctacaaaaaaatctgacac 26720582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 26990265 - 26990331
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||| ||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  26990265 gagttatgatacatagacatccttaggtggcaatacaccctttaacacctacaaaaaaatctgacac 26990331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 39689000 - 39688934
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctga 321  Q
    ||||||| |||||||||  ||||||||| ||||||||||| || |||||||||||||||||||||||    
T  39689000 taagagttatgatacataaacacccttaagtggcaatacatcccttgacacccacacaaaaatctga 39688934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 10356639 - 10356698
Alignment:
Q  263 atgatacatggacacccttaggtggcaataca-ccctttgacacccacacaaaaatctga 321  Q
    ||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  10356639 atgatacatagacatccttaggtggcaatacatcccattgacacccacacaaaaatctga 10356698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 33825424 - 33825358
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||| ||| ||||  ||||||||||||||||| | |||||||||||| |||||||||||||    
T  33825424 gagtaatgatgcatagacattcttaggtggcaatacactccttgacacccacataaaaatctgacac 33825358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 6260101 - 6260035
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||  ||| || |||||| ||||||||||||| |||||||| ||||||||| ||||    
T  6260101 gagtaatgatacatacacaaccataggtgacaatacaccctttaacacccacgcaaaaatctaacac 6260035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 16327921 - 16327967
Alignment:
Q  278 ccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| || |||||||||||| |||||||||||||    
T  16327921 ccttaggtggcaatacatccattgacacccacataaaaatctgacac 16327967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 25914896 - 25914969
Alignment:
Q  250 aaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||| |||||||||| ||  ||| | ||||||||||||| ||| |||||||||||||| ||||||||    
T  25914896 aaaaataagagtgatgatacatgtaccacctcatgtggcaatacaccattt-acacccacacaaaattctgacac 25914969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 9603810 - 9603879
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||||  ||| |||||||||  ||||||| | || ||||| |||||||||||||||||    
T  9603810 taagagtaatgatacatatacatccttaggtgataatacactcattcacacctacacaaaaatctgacac 9603879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 31008986 - 31009054
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||| |||||||||  ||| ||||||||| |||||||  |||  |||||||||||||||||||||||    
T  31008986 aagagttatgatacataaacatccttaggtgacaatacattcttccacacccacacaaaaatctgacac 31009054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 2614556 - 2614622
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| ||  ||| | ||||||||||||||||| ||||||| |||||| ||||||||    
T  2614556 agagtaatgatacatgtaccacctcatgtggcaatacacccttt-acacccatacaaaattctgacac 2614622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 20073616 - 20073555
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatct 319  Q
    ||||||||||| || |||| | |||| || |||||||||||||||||| |||| ||||||||    
T  20073616 gagtaatgatatatagacatcattagatgacaatacaccctttgacactcacataaaaatct 20073555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 504221 - 504155
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  504221 gagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacac 504155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 1180040 - 1179974
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1180040 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatctgacac 1179974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 12831047 - 12831113
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12831047 gagtaatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacac 12831113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 14547918 - 14547988
Alignment:
Q  254 ataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14547918 ataagagtaaagatacatagacacccttaggtggcaatacaccatttgacacccacacaaaaatctgacac 14547988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 15197333 - 15197399
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15197333 gagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacacaaaaatctgacac 15197399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 16383367 - 16383442
Alignment:
Q  248 ataaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||||| |||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16383367 ataaaaaaaagagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgaca 16383442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 37038478 - 37038545
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  37038478 agagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacac 37038545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 23122697 - 23122631
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  23122697 gagtaatgatacatagacacccttaagtggcaatacaccttttgacacccacacaaaaatctgacac 23122631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 34012396 - 34012330
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  34012396 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacac 34012330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 40424043 - 40423977
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40424043 gagtaatgatacatagatacccttaggtggcaatacaccctttgacatccacacaaaaatctgacac 40423977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 5957831 - 5957896
Alignment:
Q  259 agtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  5957831 agtaatgatacatagacattcttaggtggcaatacaccctttgacacccacacaaaaatctgacac 5957896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 34307214 - 34307281
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34307214 aagagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgaca 34307281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 44507188 - 44507121
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||| |||||||||||||||||||||||    
T  44507188 agagtaatgatacatagacacccttaggtggtaatacactctttaacacccacacaaaaatctgacac 44507121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 10621182 - 10621121
Alignment:
Q  263 atgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  10621182 atgatacatagacatccttaggtggtaatacaccctttgacacccacacaaaaatctgacac 10621121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 30479584 - 30479509
Alignment:
Q  248 ataaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||||| | |||| |||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  30479584 ataaaaaaaggagttatgatacataaacacccttaggtggcaatacaccctttgacatccacataaaaatctgaca 30479509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 4854966 - 4854900
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctga 321  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||| ||||||||||    
T  4854966 taagagtaatgatacatagacatccttaggtggcaatacaccctttaacacctacataaaaatctga 4854900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 15048281 - 15048216
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  15048281 gagttatgatacatagacatccttaggtggcaatacaccctttgaca-ccacacaaaaatctgacac 15048216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 20075034 - 20074968
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||| |||||||||||||||||| |||||||||||||| |||||| ||||||    
T  20075034 gagtaatgatacatagacatccttaggtggcaatacactctttgacacccacataaaaatgtgacac 20074968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 24307896 - 24307830
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctga 321  Q
    ||||||| |||||||||  ||||||||||||||||||||| || |||||||||||||||||||||||    
T  24307896 taagagttatgatacataaacacccttaggtggcaatacatcccttgacacccacacaaaaatctga 24307830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 24307627 - 24307692
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctga 321  Q
    |||||| |||||||||  ||||||||||||||||||||| || |||||||||||||||||||||||    
T  24307627 aagagttatgatacataaacacccttaggtggcaatacatccattgacacccacacaaaaatctga 24307692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 10284733 - 10284665
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||| ||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||| ||||||    
T  10284733 aagagttatgatacatagacacccttaagtgacaatacactctttgacacccacacaaaaatttgacac 10284665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 43414681 - 43414615
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| ||||||||| |||| |||||| |||||| |||||||||||||||||||||||||||| ||||    
T  43414681 gagttatgatacatagacatccttagatggcaacacaccctttgacacccacacaaaaatctaacac 43414615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 8841513 - 8841466
Alignment:
Q  277 cccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  8841513 cccttaggtggcagtacaccctttgacacccacacaaaaatctaacac 8841466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 32032724 - 32032789
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||| |||||||||  ||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  32032724 agagttatgatacataaacacccttaggtggcaatacatcc-ttgacatccacacaaaaatctgaca 32032789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 14055692 - 14055631
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatct 319  Q
    |||| ||||||||| |||||||||||||| |||||||| | |||||| ||||||||||||||    
T  14055692 gagttatgatacattgacacccttaggtgacaatacactccttgacatccacacaaaaatct 14055631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 16056509 - 16056436
Alignment:
Q  250 aaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||| |||||| |||||||||  ||| ||||| ||| ||||||| || |||||||||||||||||||||||||    
T  16056509 aaaaaaaagagttatgatacataaacatccttatgtgacaatacatcccttgacacccacacaaaaatctgaca 16056436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 42221513 - 42221581
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||  ||| ||||||||| |||||||  | | ||||||||||||||||||||||||    
T  42221513 aagagtaatgatacatatacatccttaggtgacaatacattcctggacacccacacaaaaatctgacac 42221581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 297
Target Start/End: Original strand, 9122196 - 9122234
Alignment:
Q  259 agtaatgatacatggacacccttaggtggcaatacaccc 297  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  9122196 agtaatgatacatagacacccttaggtggcaatacaccc 9122234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 38229429 - 38229493
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||| |||||||||| |||| ||||||||||||||| | |  ||||||||||||||||||||||||    
T  38229429 gagttatgatacatgaacactcttaggtggcaatacgctc-ctgacacccacacaaaaatctgaca 38229493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 11582959 - 11582893
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| ||  ||| | ||||||||||||||||| ||||||| |||||| ||||||||    
T  11582959 agagtaatgatacatgtaccacctcatgtggcaatacacccttt-acacccatacaaaattctgacac 11582893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 2547188 - 2547123
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| |||||||||| ||  || || ||||||||||||||||| |||||||||||||| ||||||||    
T  2547188 gagtgatgatacatgtaccaccctatgtggcaatacacccttt-acacccacacaaaattctgacac 2547123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 17443824 - 17443890
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||| ||||||||| |||| ||||||||| ||||||||   || |||| |||||||||||||||||    
T  17443824 agagttatgatacatagacaaccttaggtgacaatacacttcttaacactcacacaaaaatctgaca 17443890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 15259032 - 15258964
Alignment:
Q  255 taagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||||| ||||||||| || || ||||| |||||||||| || | |||| ||||| ||||||||||||    
T  15259032 taagagttatgatacatagatactcttagatggcaatacatccctggacatccacataaaaatctgaca 15258964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 29705528 - 29705489
Alignment:
Q  284 gtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  29705528 gtggcaatacacccttt-acacccacacaaaattctgacac 29705489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 32869678 - 32869744
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32869678 gagtaaagatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 32869744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 15990150 - 15990077
Alignment:
Q  250 aaaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||||||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15990150 aaaaataagagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgaca 15990077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 22880755 - 22880692
Alignment:
Q  261 taatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22880755 taatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaattctgacac 22880692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 17598554 - 17598620
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  17598554 gagtaatgatacatagacacccttaggtggcaatacatcttttgacacccacacaaaaatctgacac 17598620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 30341462 - 30341395
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30341462 aagagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgaca 30341395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 11427615 - 11427684
Alignment:
Q  257 agagtaatgatacatggacaccct--taggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  11427615 agagtaatgatacatagacaccctcttaggtggcaatacatcctttgacacccacacaaaaatctgacac 11427684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 31109500 - 31109434
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||  || |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31109500 gagtaatgattaatagacacccttaggtggcaatacaccctttgacatccacacaaaaatctgacac 31109434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 15508124 - 15508059
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15508124 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgaca 15508059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 6209567 - 6209503
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctg 320  Q
    |||||||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||    
T  6209567 aagagtaatgatacatagacacccttaggtggcaatacactatttgacactcacacaaaaatctg 6209503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 31976247 - 31976314
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||| ||||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  31976247 agagttatgatacatagacatccttaggtggcaatataccctttaacacccacacaaaaatctgacac 31976314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 29857827 - 29857893
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||| |||| |||||||||||| ||| |||||||||||||||||||||||    
T  29857827 gagtaatgatacatagacacctttagatggcaatacaccttttaacacccacacaaaaatctgacac 29857893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 31953130 - 31953065
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||||||||| || |||| |||||||||||||||||||| |||||||||||| ||||||||||||    
T  31953130 gagtaatgatagatagacatccttaggtggcaatacaccccttgacacccacataaaaatctgaca 31953065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 28536582 - 28536520
Alignment:
Q  262 aatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||  ||| ||||||||||||||||| || ||||||||||||||||||||||||||    
T  28536582 aatgatacataaacatccttaggtggcaatacaacccttgacacccacacaaaaatctgacac 28536520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 31110861 - 31110795
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||| ||||||||| |||| |||||||||||||||||||||||||||  | ||||||||||||||||    
T  31110861 aagagttatgatacatagacatccttaggtggcaatacaccctttgaca--ctcacaaaaatctgacac 31110795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 15832575 - 15832643
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||| |||||| ||||||| ||||| | | |||||||||||||||||||| ||||||    
T  15832575 aagagtaatgatacatagacacctttaggtgacaataaatcatttgacacccacacaaaaatttgacac 15832643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 946377 - 946442
Alignment:
Q  259 agtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||| ||||||| |||| |||||||||  |||||||||||||||||| || ||||||||||||||    
T  946377 agtaacgatacatagacatccttaggtgataatacaccctttgacacctacccaaaaatctgacac 946442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 12732475 - 12732548
Alignment:
Q  251 aaaataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| |||||||||||||||| ||||  |||| ||||||||| |  | ||||||||||||||||||||||||||    
T  12732475 aaaaaaagagtaatgatacatagacattcttaagtggcaatataatcattgacacccacacaaaaatctgacac 12732548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 4231570 - 4231614
Alignment:
Q  280 ttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||    
T  4231570 ttaggtggcaatacaccccttgccacccacacaaaaatctgacac 4231614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 23128229 - 23128161
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||| |||||||| || |||||| ||| |||  |||||| |||||||||||||||||||||||||||||    
T  23128229 aagaataatgatatatagacacctttatgtgataatacatcctttgacacccacacaaaaatctgacac 23128161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 9698237 - 9698306
Alignment:
Q  254 ataagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||||| ||  ||| | ||||||||||||||||| ||||||| |||||| ||||||||    
T  9698237 ataagagtaatgatacatgtaccacctcatgtggcaatacacccttt-acacccatacaaaattctgacac 9698306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 22422119 - 22422053
Alignment:
Q  257 agagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    ||||||||||||||| |||| ||||||||||||||| | |  ||||||| || |||||| |||||||    
T  22422119 agagtaatgatacatagacatccttaggtggcaatagatctcttgacactcatacaaaattctgaca 22422053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 7367715 - 7367676
Alignment:
Q  284 gtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  7367715 gtggcaatacacccttt-acacccacacaaaattctgacac 7367676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 26669943 - 26669982
Alignment:
Q  284 gtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  26669943 gtggcaatacacccttt-acacccacacaaaattctgacac 26669982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 4029 - 4095
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||||| |||| |||||||||||| ||| |||||||||||||||||||||||    
T  4029 gagtaatgatacatagacacctttagatggcaatacaccttttaacacccacacaaaaatctgacac 4095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 10211 - 10143
Alignment:
Q  256 aagagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||| ||||||||| |||||| ||||||||||||||| ||||||||| ||||| |||||||||||||    
T  10211 aagagttatgatacatagacacctttaggtggcaatacatcctttgacatccacataaaaatctgacac 10143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 1029 - 963
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||| | ||||||||||||||||||||| ||| ||||||||||| |||||||    
T  1029 gagtaatgatacatagacatctttaggtggcaatacaccctttaacatccacacaaaaaactgacac 963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 1029 - 963
Alignment:
Q  258 gagtaatgatacatggacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    |||||||||||||| |||| | ||||||||||||||||||||| ||| ||||||||||| |||||||    
T  1029 gagtaatgatacatagacatctttaggtggcaatacaccctttaacatccacacaaaaaactgacac 963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 152514 - 152563
Alignment:
Q  274 acacccttaggtggcaatacaccctttgacacccacacaaaaatctgaca 323  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  152514 acacccttgggtggcaatacaccccttgacacccacacaaaaatctgaca 152563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 851 - 812
Alignment:
Q  284 gtggcaatacaccctttgacacccacacaaaaatctgacac 324  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  851 gtggcaatacacccttt-acacccacacaaaattctgacac 812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University