View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_low_26 (Length: 260)
Name: NF1458_low_26
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_low_26 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 5562 - 5804
Alignment:
| Q |
1 |
ttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5562 |
ttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacactt |
5661 |
T |
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| Q |
101 |
cagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5662 |
cagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatca |
5761 |
T |
|
| Q |
201 |
aagtaactttcacttacttgtaccatctactaggtcttacaaa |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5762 |
aagtaactttcacttacttgtaccatctactaggtcttacaaa |
5804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 5562 - 5804
Alignment:
| Q |
1 |
ttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacactt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5562 |
ttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacactt |
5661 |
T |
|
| Q |
101 |
cagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5662 |
cagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatca |
5761 |
T |
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| Q |
201 |
aagtaactttcacttacttgtaccatctactaggtcttacaaa |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5762 |
aagtaactttcacttacttgtaccatctactaggtcttacaaa |
5804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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