View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1458_low_30 (Length: 248)
Name: NF1458_low_30
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_low_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 35567702 - 35567924
Alignment:
| Q |
9 |
gaacaaaataagtgaaaacggaagtgtacaaaagaaatgtggtaagtaatagcaagcccaattaattaaaggcctaaatcagattcataagttgataaca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35567702 |
gaacaaaataagtgaaaacggaagtgtacaaaagaaatgtggtaagtaatagcaagcccaattaattaaaggcctaaatcagattcataagttgataaca |
35567801 |
T |
|
| Q |
109 |
caaaatatggtaggtactttctacacccttcaacattattcggatgtgtgcttctaacaaatgcannnnnnnnnnctgtatagaaatatattcttgaaca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35567802 |
caaaatatggtaggtactttctacacccttcaacattattcggatgtgtgcttctaacaaatgcattttttttttctgtatagaaatatattcttgaaca |
35567901 |
T |
|
| Q |
209 |
aagtatagattccaaaaatagaa |
231 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
35567902 |
aagtataccgtccaaaaatagaa |
35567924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University