View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_low_31 (Length: 240)
Name: NF1458_low_31
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 35568020 - 35568244
Alignment:
| Q |
5 |
cataacacaaatggagaaggatacagcttgaaagatgatggtgtcatctcatatggcgctatataaagagaaacaaaaagtagaacatgtcaggtattta |
104 |
Q |
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| T |
35568020 |
cataacataaattgagaatgatacatcctgaaagatgattgtgtcatctcatatggcgctatataaagagaaacaaaaagtaggacatgtcaggtattta |
35568119 |
T |
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| Q |
105 |
ttttcaatgtagggtagattggttatta-nnnnnnnncaaaagtaggtcacgc---nnnnnnnnnnnntccc-aaaataaacttttggatgctagcatat |
199 |
Q |
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| T |
35568120 |
ttttcaatgtagggtagattggttattatttttttttcaaaagtaggtcacgcaaaaaaaaaaaaaaatcccaaaaataaacttttggatgctagcatat |
35568219 |
T |
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| Q |
200 |
ctatgtgaaatgacagccggaggtt |
224 |
Q |
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| T |
35568220 |
ctatgtgaaatgacagccggaggtt |
35568244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 35568012 - 35567962
Alignment:
| Q |
75 |
aaacaaaaagtagaacatgtcaggtatttattttcaatgtagggtagattg |
125 |
Q |
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| T |
35568012 |
aaacaaaaagtagaacatgttggatatttattttcaatgtatggtggattg |
35567962 |
T |
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