View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1458_low_34 (Length: 236)

Name: NF1458_low_34
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1458_low_34
NF1458_low_34
[»] chr2 (3 HSPs)
chr2 (1-222)||(5211712-5211934)
chr2 (1-62)||(28572338-28572399)
chr2 (1-61)||(15859261-15859321)
[»] chr5 (3 HSPs)
chr5 (1-63)||(42575553-42575615)
chr5 (1-61)||(8692734-8692795)
chr5 (1-60)||(8369618-8369677)
[»] chr7 (3 HSPs)
chr7 (1-65)||(7425789-7425853)
chr7 (1-60)||(26938509-26938568)
chr7 (1-60)||(1643235-1643294)
[»] chr4 (4 HSPs)
chr4 (1-60)||(18849676-18849735)
chr4 (1-60)||(16493215-16493274)
chr4 (3-60)||(1796225-1796282)
chr4 (1-58)||(31862920-31862977)
[»] chr8 (3 HSPs)
chr8 (1-60)||(33925018-33925077)
chr8 (1-60)||(33190826-33190885)
chr8 (1-53)||(37219685-37219737)
[»] chr3 (5 HSPs)
chr3 (1-60)||(54122141-54122200)
chr3 (1-61)||(21296419-21296479)
chr3 (1-60)||(39364954-39365013)
chr3 (1-33)||(26143032-26143064)
chr3 (1-33)||(43639460-43639492)
[»] chr1 (1 HSPs)
chr1 (1-63)||(52432443-52432505)
[»] chr6 (3 HSPs)
chr6 (1-58)||(4238550-4238607)
chr6 (1-63)||(31265910-31265974)
chr6 (1-29)||(3604548-3604576)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5211934 - 5211712
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggaggg-agtaatagaaaatgaaaaccaagaaagtaataaatgactagaa 99  Q
    |||||| ||||||||||||||||||||||||||||  |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  5211934 atttgttttaatatgtgtgaaatgaaaaaatggctcggctaattcgggacggaggggagtaatagaaaatgaaaaccaagaaagtaataaatgactaaaa 5211835  T
Q  100 acataacacaatcctgcagcaaacaaaatgcactcacactatatgtcnnnnnnnttgtcatgtcaagtgttttaagattacaaaatagagcttaaattta 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||    
T  5211834 acataacacaatcctgcagcaaacaaaatgcactcacactatatgtcaaaaaaattgtcatgtcaagtgttttaagattacaaaatagagcttacattta 5211735  T
Q  200 tctaataatcgaatgaaaaatct 222  Q
    |||||||||||||||||||||||    
T  5211734 tctaataatcgaatgaaaaatct 5211712  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28572338 - 28572399
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagtaat 62  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  28572338 atttgtcttaatatgtgtgaaatgaaaaaatggctcagctaattcgggacggagggagtaat 28572399  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15859321 - 15859261
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagtaa 61  Q
    |||||||||||||||||||||| |||||||||| |  |||||||||| ||||  |||||||    
T  15859321 atttgtcttaatatgtgtgaaaagaaaaaatggttcagctaattcgggacggttggagtaa 15859261  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42575615 - 42575553
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagtaata 63  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||    
T  42575615 atttgtcttaatatgtgtgaaatgaaaaaatggctcagctaattcgggacggagggagtaata 42575553  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 8692795 - 8692734
Alignment:
Q  1 atttgtcttaatatgtgtgaaatg-aaaaaatggctacgctaattcggcacggagggagtaa 61  Q
    |||||||||||||||||||||| | |||||||||||  |||||||||| |||||||||||||    
T  8692795 atttgtcttaatatgtgtgaaaagaaaaaaatggctcagctaattcgggacggagggagtaa 8692734  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8369677 - 8369618
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagta 60  Q
    |||||||||||||  |||||||||||||||||| |  |||||||||| ||||||||||||    
T  8369677 atttgtcttaatacatgtgaaatgaaaaaatggttcagctaattcgggacggagggagta 8369618  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7425853 - 7425789
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagtaataga 65  Q
    ||||||||||||| |||||||||||||||||||||  |||||||||| |||||||||||||||||    
T  7425853 atttgtcttaatacgtgtgaaatgaaaaaatggctcagctaattcgggacggagggagtaataga 7425789  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26938568 - 26938509
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagta 60  Q
    ||||||||||||||||||||||||||||||||| |   ||||||||| ||||||||||||    
T  26938568 atttgtcttaatatgtgtgaaatgaaaaaatggttcaactaattcgggacggagggagta 26938509  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 1643294 - 1643235
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagta 60  Q
    |||| ||||||||||||||||||||  ||||||||  | |||||||| ||||||||||||    
T  1643294 atttttcttaatatgtgtgaaatgaggaaatggctcggttaattcgggacggagggagta 1643235  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 18849735 - 18849676
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagta 60  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||| ||||||||||||    
T  18849735 atttgtcttaatatgtgtgaaataaaaaaatggcttagctaattcgggacggagggagta 18849676  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16493274 - 16493215
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagta 60  Q
    |||| ||||||||||||||||||||||||||||||  |||||||||| | ||||||||||    
T  16493274 atttatcttaatatgtgtgaaatgaaaaaatggctcagctaattcgggaaggagggagta 16493215  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 1796282 - 1796225
Alignment:
Q  3 ttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagta 60  Q
    |||||||||||||||||||| ||||||||||||  |||||||||| |||||| |||||    
T  1796282 ttgtcttaatatgtgtgaaaagaaaaaatggctcagctaattcggaacggagagagta 1796225  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31862920 - 31862977
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggag 58  Q
    |||||| |||||||||||||||||||||||| |||   |||||| || ||||||||||    
T  31862920 atttgttttaatatgtgtgaaatgaaaaaatagctcaactaatttggaacggagggag 31862977  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33925077 - 33925018
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagta 60  Q
    |||||||||||||||||||||| ||||||||||||  |||||||||| | ||||||||||    
T  33925077 atttgtcttaatatgtgtgaaaagaaaaaatggctcagctaattcgggatggagggagta 33925018  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33190885 - 33190826
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagta 60  Q
    |||||||||||||||||||||| ||||||||||||  ||||||| || ||||||| ||||    
T  33190885 atttgtcttaatatgtgtgaaaagaaaaaatggctcagctaatttgggacggaggaagta 33190826  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 37219737 - 37219685
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacgga 53  Q
    |||||||||||||||||||||||||||||||| ||  ||||||| || |||||    
T  37219737 atttgtcttaatatgtgtgaaatgaaaaaatgactcagctaatttgggacgga 37219685  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 54122200 - 54122141
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagta 60  Q
    |||||||||||||||||||||||||||||||||||  |||||||| | || |||||||||    
T  54122200 atttgtcttaatatgtgtgaaatgaaaaaatggctcagctaattcaggacagagggagta 54122141  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 21296479 - 21296419
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagtaa 61  Q
    |||||||||| ||||||||||| |||||||||| |  |||||||||| |||||||||||||    
T  21296479 atttgtcttagtatgtgtgaaaagaaaaaatggttcagctaattcgggacggagggagtaa 21296419  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 39365013 - 39364954
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagta 60  Q
    |||| ||||||||||||||||||||  || |||||  |||||||||| ||||||||||||    
T  39365013 atttttcttaatatgtgtgaaatgagcaagtggctcagctaattcgggacggagggagta 39364954  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26143032 - 26143064
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatgg 33  Q
    ||||||||||||||||||||||||| |||||||    
T  26143032 atttgtcttaatatgtgtgaaatgagaaaatgg 26143064  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43639492 - 43639460
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatgg 33  Q
    |||||||||||||||||||||| ||||||||||    
T  43639492 atttgtcttaatatgtgtgaaaagaaaaaatgg 43639460  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 52432443 - 52432505
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggagtaata 63  Q
    |||||||||||| ||||||||| ||||||||||||  ||||||| || ||| |||| ||||||    
T  52432443 atttgtcttaatgtgtgtgaaaagaaaaaatggctcagctaatttgggacgaagggtgtaata 52432505  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4238550 - 4238607
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaatggctacgctaattcggcacggagggag 58  Q
    |||| |||| |||||||||||||||||||||| ||  |||||||| | ||||||||||    
T  4238550 atttatcttgatatgtgtgaaatgaaaaaatgactcagctaattcaggacggagggag 4238607  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31265910 - 31265974
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaaa--tggctacgctaattcggcacggagggagtaata 63  Q
    ||||||||||||||||||||||| ||||||  | ||   |||||||||| |||||||||||||||    
T  31265910 atttgtcttaatatgtgtgaaataaaaaaaaatagcccagctaattcgggacggagggagtaata 31265974  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 3604576 - 3604548
Alignment:
Q  1 atttgtcttaatatgtgtgaaatgaaaaa 29  Q
    |||||||||||||||||||||||||||||    
T  3604576 atttgtcttaatatgtgtgaaatgaaaaa 3604548  T

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