View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_low_35 (Length: 235)
Name: NF1458_low_35
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 36669951 - 36670132
Alignment:
| Q |
1 |
agttaatggatggattaaatggttttttcaacaaaagaaatataatgaattataatggaccaatgannnnnnnnnatccatccattcttatctaaatcca |
100 |
Q |
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| T |
36669951 |
agttaatggatggattaaatggttttttcaacaaaagaaatataatgaattataatggactaatgatttttttt-atccatccattcttatctaaatcca |
36670049 |
T |
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| Q |
101 |
tattcatcaaattcatccgttgtgtcacccctagtttaaatagatatattaaaatccattttgataattataatggcaaaaac |
183 |
Q |
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| T |
36670050 |
tattcatcaaattcatccgttgtgtcacccctagtttaaatagatatattaaaacccattttgataattataatggcaaaaac |
36670132 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 8041230 - 8041274
Alignment:
| Q |
148 |
attaaaatccattttgataattataatggcaaaaacaattttgat |
192 |
Q |
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| T |
8041230 |
attaaaacccattttgataattatactttcaaaaacaattttgat |
8041274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 25748039 - 25747995
Alignment:
| Q |
148 |
attaaaatccattttgataattataatggcaaaaacaattttgat |
192 |
Q |
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| T |
25748039 |
attaaaatccattttgataattatactttcaaaagcaattttgat |
25747995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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