View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1458_low_37 (Length: 229)

Name: NF1458_low_37
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1458_low_37
NF1458_low_37
[»] chr2 (2 HSPs)
chr2 (1-229)||(32785801-32786029)
chr2 (44-72)||(32786060-32786088)
[»] chr8 (5 HSPs)
chr8 (145-229)||(18315302-18315386)
chr8 (151-229)||(27922500-27922578)
chr8 (145-229)||(32151287-32151371)
chr8 (174-229)||(17628043-17628098)
chr8 (174-229)||(17636430-17636485)
[»] chr5 (3 HSPs)
chr5 (174-229)||(41901564-41901619)
chr5 (151-225)||(32267467-32267541)
chr5 (174-229)||(37937902-37937957)
[»] chr4 (8 HSPs)
chr4 (146-229)||(553466-553549)
chr4 (174-229)||(1548453-1548508)
chr4 (144-229)||(8184059-8184144)
chr4 (174-229)||(1519171-1519226)
chr4 (183-229)||(8187120-8187166)
chr4 (145-229)||(1524515-1524599)
chr4 (147-229)||(558486-558568)
chr4 (188-229)||(12116604-12116645)
[»] chr6 (4 HSPs)
chr6 (177-229)||(6432179-6432231)
chr6 (188-229)||(28935078-28935119)
chr6 (174-229)||(6394879-6394934)
chr6 (174-229)||(6410021-6410076)
[»] chr3 (2 HSPs)
chr3 (154-229)||(51120922-51120997)
chr3 (174-225)||(27005805-27005856)
[»] chr1 (2 HSPs)
chr1 (174-229)||(19468528-19468583)
chr1 (174-229)||(52082596-52082651)
[»] chr7 (1 HSPs)
chr7 (174-226)||(18724388-18724440)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 32786029 - 32785801
Alignment:
Q  1 atgcactaaactgtaacagtttcatcattgttttgggaaccctagtattgtatatttgtatatggtatatttagatcagcaattgacagtccatacgaca 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32786029 atgcactaaagtgtaacagtttcatcattgttttgggaaccctagtattgtatatttgtatatggtatatttagatcagcaattgacagtccatacgaca 32785930  T
Q  101 tccgtgtcaacccttgttttgggaatgctagttaacatgccttgtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785929 tccgtgtcaacccttgttttgggaatgctagttaacatgccttgtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcat 32785830  T
Q  201 caattcttgtatgtgacaagttcaacacc 229  Q
    |||||||||||||||||||||||||||||    
T  32785829 caattcttgtatgtgacaagttcaacacc 32785801  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 32786088 - 32786060
Alignment:
Q  44 agtattgtatatttgtatatggtatattt 72  Q
    |||||||||||||||||||||||||||||    
T  32786088 agtattgtatatttgtatatggtatattt 32786060  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 18315386 - 18315302
Alignment:
Q  145 taacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    |||||||| |||||||| | || ||||  ||||||||||||| |||||||||||||||| | |||||||||||||||||||||||    
T  18315386 taacagttgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacc 18315302  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 27922500 - 27922578
Alignment:
Q  151 tttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    |||||||||||||  | ||||  ||||||||| ||||||||||||||||||||   |||||| ||||||||||||||||    
T  27922500 tttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacc 27922578  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 32151287 - 32151371
Alignment:
Q  145 taacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    |||||||| ||||||||||  | ||||  ||||||||||||| |||| |||||||||||  ||||||  ||||||||| ||||||    
T  32151287 taacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacc 32151371  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 17628098 - 17628043
Alignment:
Q  174 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    |||||||||||   ||||||| |||||||| ||| |||||||||||||||||||||    
T  17628098 ttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacc 17628043  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 17636485 - 17636430
Alignment:
Q  174 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    ||||||||||||| | ||||||||| |||| || ||| ||||||||||||||||||    
T  17636485 ttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacc 17636430  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 41901619 - 41901564
Alignment:
Q  174 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    ||||||||| |||||||||||||||||||| | |||||| ||||||||||||||||    
T  41901619 ttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacc 41901564  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 32267467 - 32267541
Alignment:
Q  151 tttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaa 225  Q
    |||||||||||||  | ||||  ||||||||| |||||||||||||||||||| | |||| ||||||||||||||    
T  32267467 tttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaa 32267541  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 37937902 - 37937957
Alignment:
Q  174 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    ||||||| ||||| |||| || |||||||||||||||||||| ||||| |||||||    
T  37937902 ttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacc 37937957  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 553466 - 553549
Alignment:
Q  146 aacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    ||||||| ||||||||||  | ||||  |||| ||||||| ||||||||||||||||| |||||||  ||||||||||||||||    
T  553466 aacagttgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacc 553549  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 1548508 - 1548453
Alignment:
Q  174 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    ||||||||||||  |||| |||||||||||| ||||||||||||||||||||||||    
T  1548508 ttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 1548453  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 8184144 - 8184059
Alignment:
Q  144 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    ||||||||| ||||||||||  | ||||  |||||||  |||| ||||||  |||||||| |||||||||||||||||||||||||    
T  8184144 gtaacagttccaaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacc 8184059  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 1519226 - 1519171
Alignment:
Q  174 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    ||||||||||||| |||||||  |||||||  ||||||||||||||||||||||||    
T  1519226 ttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacc 1519171  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 8187166 - 8187120
Alignment:
Q  183 cataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    ||||||||| || |||||||| |||||||||||||||||||||||||    
T  8187166 cataaagtgttttatcatcaactcttgtatgtgacaagttcaacacc 8187120  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 1524599 - 1524515
Alignment:
Q  145 taacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    |||||||| |||||||||| || ||||   |||||||| ||| |||| |||||||||||  |||||| ||||||| |||||||||    
T  1524599 taacagttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacc 1524515  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 558486 - 558568
Alignment:
Q  147 acagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    |||||| |||||||||| || ||||  ||||||||||||  |||||||||||||||||   |||   ||||||||||||||||    
T  558486 acagttccaaaagcccacgacaactctttgagatcacatggagtgcttcatcatcaatatatgttaatgacaagttcaacacc 558568  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 12116645 - 12116604
Alignment:
Q  188 agtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    |||| |||||||||||  ||||||||||||||||||||||||    
T  12116645 agtgattcatcatcaacacttgtatgtgacaagttcaacacc 12116604  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 6432179 - 6432231
Alignment:
Q  177 agatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    ||||||||||||||| |||||||||||  ||||||| ||||||||||||||||    
T  6432179 agatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacacc 6432231  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 28935078 - 28935119
Alignment:
Q  188 agtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  28935078 agtgcttcatcgtcaactcttgtatgtgacaagttcaacacc 28935119  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 6394879 - 6394934
Alignment:
Q  174 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    ||||||||||| |||| | |||||||||||  ||||||| ||||||||||||||||    
T  6394879 ttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacc 6394934  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 6410021 - 6410076
Alignment:
Q  174 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    |||||||||||||||| | |||||||||||  ||||||| |||| |||||||||||    
T  6410021 ttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacacc 6410076  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 51120997 - 51120922
Alignment:
Q  154 caaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    |||||||||| || ||||  ||||||| ||||| |||  ||||||||||| ||||||||| |||||||||||||||    
T  51120997 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacc 51120922  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 27005856 - 27005805
Alignment:
Q  174 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaa 225  Q
    ||||||| |||||||||| |  || |||||||||||||||||||||||||||    
T  27005856 ttgagattacataaagtgttgtattatcaattcttgtatgtgacaagttcaa 27005805  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 19468583 - 19468528
Alignment:
Q  174 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    |||||||||||||||||| |||||||||||   |||||| |||||| |||||||||    
T  19468583 ttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacc 19468528  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 52082596 - 52082651
Alignment:
Q  174 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 229  Q
    ||||||||||||| | || ||||||||||||| |||| | ||||||||||||||||    
T  52082596 ttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacc 52082651  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 18724440 - 18724388
Alignment:
Q  174 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaac 226  Q
    |||||||| |||| ||| ||| ||||||||||||||  |||||||||||||||    
T  18724440 ttgagatcgcatacagtactttatcatcaattcttgagtgtgacaagttcaac 18724388  T

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