View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_low_39 (Length: 224)
Name: NF1458_low_39
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_low_39 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5294514 - 5294270
Alignment:
| Q |
1 |
tttcttgagctagaagagttcttcgttgaatctgcattagaagaagcaaaagaatgtgttgttcttgg------------------agattcatattgaa |
82 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5294514 |
tttcttaagctagaagaattcttcgttgaatctgcattagaagaagcaaaagaatgtgttgttcttggtgtacaaattgttcttggagattcatattgaa |
5294415 |
T |
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| Q |
83 |
atttaacatcttctacttcttttgcttctctttctaatttcaacaattgttcttccaaaacctgttgtgctttcctctcaaatcttctccttatgttttc |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5294414 |
atttaacatcttctacttcttttgcttctctttctaatttcaacaattgttcttccaaaacctgttgtgctttcctctcaaatcttctccttatgttttc |
5294315 |
T |
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| Q |
183 |
atattccttttctctatcatattc---atactcatcaatcttcat |
224 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5294314 |
atattccttttctctatcatattcatgatactcatcaatcttcat |
5294270 |
T |
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