View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1458_low_4 (Length: 493)

Name: NF1458_low_4
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1458_low_4
NF1458_low_4
[»] chr3 (4 HSPs)
chr3 (23-236)||(22600345-22600559)
chr3 (229-322)||(22536941-22537035)
chr3 (431-477)||(22536786-22536832)
chr3 (1-31)||(22721924-22721954)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-31)||(23778-23808)
[»] chr4 (2 HSPs)
chr4 (1-31)||(48336256-48336286)
chr4 (1-30)||(51894689-51894718)
[»] chr8 (1 HSPs)
chr8 (1-29)||(35011206-35011234)
[»] chr7 (1 HSPs)
chr7 (1-29)||(7240744-7240772)
[»] chr6 (1 HSPs)
chr6 (1-29)||(6068561-6068589)
[»] chr5 (1 HSPs)
chr5 (1-33)||(37149062-37149094)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 22600559 - 22600345
Alignment:
Q  23 tattatatattcaaccaaaagaatatgtataagaaagatatgaggtcactaattttacgnnnnnnnaaaaagtaaatcatgaaaaggagaacctcgagat 122  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||| |||||||| | |||    
T  22600559 tattatatattcaacaaaaagaatatgtataagaaagatatgaggtcgctaattttacgtctttttaaaaagtaaatcatgaaaaagagaaccttgggat 22600460  T
Q  123 caacaatagaggagttaaagaagtttatgtggatttagtgatg-acgtcggtaggttgggcactaacatgtgattgtggtatagtctttcaaggatgaaa 221  Q
    || |||||||||||||||||||||||||||||||||||||||| | |||||||||| | ||||||||||||||||||||| ||||||| |||||||||||    
T  22600459 catcaatagaggagttaaagaagtttatgtggatttagtgatgaatgtcggtaggtagagcactaacatgtgattgtggtgtagtcttccaaggatgaaa 22600360  T
Q  222 agaacatgtgattat 236  Q
    |||||||||||||||    
T  22600359 agaacatgtgattat 22600345  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 229 - 322
Target Start/End: Complemental strand, 22537035 - 22536941
Alignment:
Q  229 gtgattatagctttttaaaaaat-aaatcgtgaaaatgagcaaacctcgagatgatcaaccaagcaactaagaagttgatctagattatgtgatg 322  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  22537035 gtgattatggctttttaaaaagttaaatcgtgaaaatgagcaaacctcgagattatcaaccaagcaattaagaagttgatctagattatgtgatg 22536941  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 431 - 477
Target Start/End: Complemental strand, 22536832 - 22536786
Alignment:
Q  431 atatccttcttcataatttttccaagataatatttctattttagttt 477  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  22536832 atatccttctttataatttttccaagataatatttctattttagttt 22536786  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 22721954 - 22721924
Alignment:
Q  1 ttataaataggaccggaggtagtattatata 31  Q
    |||||||||||||||||||||||||||||||    
T  22721954 ttataaataggaccggaggtagtattatata 22721924  T

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Target: scaffold0204 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 23808 - 23778
Alignment:
Q  1 ttataaataggaccggaggtagtattatata 31  Q
    |||||||||||||||||||||||||||||||    
T  23808 ttataaataggaccggaggtagtattatata 23778  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 48336286 - 48336256
Alignment:
Q  1 ttataaataggaccggaggtagtattatata 31  Q
    |||||||||||||||||||||||||||||||    
T  48336286 ttataaataggaccggaggtagtattatata 48336256  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 51894689 - 51894718
Alignment:
Q  1 ttataaataggaccggaggtagtattatat 30  Q
    ||||||||||||||||||||||||||||||    
T  51894689 ttataaataggaccggaggtagtattatat 51894718  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 35011234 - 35011206
Alignment:
Q  1 ttataaataggaccggaggtagtattata 29  Q
    |||||||||||||||||||||||||||||    
T  35011234 ttataaataggaccggaggtagtattata 35011206  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 7240772 - 7240744
Alignment:
Q  1 ttataaataggaccggaggtagtattata 29  Q
    |||||||||||||||||||||||||||||    
T  7240772 ttataaataggaccggaggtagtattata 7240744  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6068589 - 6068561
Alignment:
Q  1 ttataaataggaccggaggtagtattata 29  Q
    |||||||||||||||||||||||||||||    
T  6068589 ttataaataggaccggaggtagtattata 6068561  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37149062 - 37149094
Alignment:
Q  1 ttataaataggaccggaggtagtattatatatt 33  Q
    |||||||||||||||||||||||||||| ||||    
T  37149062 ttataaataggaccggaggtagtattatttatt 37149094  T

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