View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1458_low_42 (Length: 207)

Name: NF1458_low_42
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1458_low_42
NF1458_low_42
[»] chr3 (2 HSPs)
chr3 (96-190)||(47563131-47563225)
chr3 (20-72)||(47563058-47563110)
[»] chr1 (1 HSPs)
chr1 (118-175)||(5156766-5156823)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 47563131 - 47563225
Alignment:
Q  96 aaaattactaaggaaacatactttttctgggcggcttcagcagctctagcgcgtgcttcttcagaggctaatctttcttcctcctttgtcatacg 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47563131 aaaattactaaggaaacatactttttctgggcggcttcagcagctctagcgcgtgcttcttcagaggctaatctttcttcctcctttgtcatacg 47563225  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 47563058 - 47563110
Alignment:
Q  20 aaaaagaagaacaagattataacatggtttttcatacatataaaaatctagaa 72  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  47563058 aaaaaaaagaataagattataacatggtttttcatatatataaaaatctagaa 47563110  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 5156823 - 5156766
Alignment:
Q  118 ttttctgggcggcttcagcagctctagcgcgtgcttcttcagaggctaatctttcttc 175  Q
    ||||||| |||||||||||||||||||| || ||||||||||||||||||| ||||||    
T  5156823 ttttctgagcggcttcagcagctctagcacgcgcttcttcagaggctaatcgttcttc 5156766  T

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