View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1458_low_8 (Length: 444)
Name: NF1458_low_8
Description: NF1458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1458_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 147 - 434
Target Start/End: Complemental strand, 3238917 - 3238630
Alignment:
| Q |
147 |
aggaaaggttcctcttaaatcacatgcattgaactcatcccttttattgaattcataattgtgtacaatatttaattattcannnnnnnatgaccaaagt |
246 |
Q |
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| T |
3238917 |
aggaaaggttcctcttaaatcacatgcattgaactaatcccttttattgaattcataattgtgtacaatatttaattattcatttttttatgaccaaagt |
3238818 |
T |
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| Q |
247 |
ttaatcatgcatattcatattgtgacaggcaacaaaagcattaaaattaggatttttgcttctacattttgccattctaataggctaccatattgagctt |
346 |
Q |
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| T |
3238817 |
ttaatcatgcatattcatattgtgacaggcaacaaaagcattaaaattaggatttttgcttctacattttgccattctaataggctaccatattgagctt |
3238718 |
T |
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| Q |
347 |
gggtttgtgattccaccatgacgattaaagggatctacaaaagttttaagtacatatcccaaatttttggtaatttatctatcctttg |
434 |
Q |
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| T |
3238717 |
gggtttgtgattccaccatgacgattaaagggatctacaaaagttttaagtacatatcccaaatttttggtaatttatctatcctttg |
3238630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 3239096 - 3238935
Alignment:
| Q |
1 |
attgttttatttattttttctctgatcatgtttacccttaacaattttcttaatctccacattaatatgacaacaaattaattaatcatctttgtattct |
100 |
Q |
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| T |
3239096 |
attgttttatttattttatctctgatcatgtttacccttaacaattttcttaatctccacattaatatgacaacaaattaattaatcatctttgtattct |
3238997 |
T |
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| Q |
101 |
tataatcaaataccaatcttcaatcattcatattatagactaatataggaaaggttcctctt |
162 |
Q |
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| T |
3238996 |
tataatcaaataccaatcttcaatcattcatattatagactaatataggaaaggttcctctt |
3238935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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