View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14590_high_5 (Length: 238)
Name: NF14590_high_5
Description: NF14590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14590_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 38527693 - 38527554
Alignment:
| Q |
18 |
gcaacatcattctaaaatgattaaaatgaagactattaactagggtggttcaaaaatcgtcacattggattaatgcataaagagaatttgacacataatc |
117 |
Q |
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| T |
38527693 |
gcaacatcgttctaaaatgattaaaatgaagactattaactaaggtggttcaaaaatcgtcacattggattaatgcataaagagaatttgacacataatc |
38527594 |
T |
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| Q |
118 |
tttatctaaaactttaatacattcagtcatgagtcctctt |
157 |
Q |
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| T |
38527593 |
tttatctaaaactttaatacattcagttatgagttctctt |
38527554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 38527174 - 38527093
Alignment:
| Q |
147 |
tgagtcctcttgttcaacactagctttttcatacaatttgagacggttaattcacacttgacacacaacaatcttcatctca |
228 |
Q |
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| T |
38527174 |
tgagtcctcttgttcaacactagctttttcatacaatttgagacggttaattcacacttgacacataacaatcttcatctca |
38527093 |
T |
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