View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14590_low_1 (Length: 580)
Name: NF14590_low_1
Description: NF14590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14590_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 16 - 580
Target Start/End: Complemental strand, 31999032 - 31998468
Alignment:
| Q |
16 |
gtttcaacatgtattgatcatttgatctttaattatatgaattagttttcctcttgtaaaacaactatatttaaaaatcgtctaaaattctaatgatgat |
115 |
Q |
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| T |
31999032 |
gtttcaacatgtattgatcatttgatctttaattatatgaattagttttcctcttgtaaaacaactatatttaaaaatcgtctaaaattctaatgatgat |
31998933 |
T |
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| Q |
116 |
tgatgttatcctctataagtagaaactctgatccacgtcctcatcgttcagatagtgacatgatatgtgccggttagacaaaaacaaaccagatagatat |
215 |
Q |
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| T |
31998932 |
cgatgttatcctctataagtagaaactctgatccacgtcctcatcgttcagatagtgacatgatatgtgccggttagacaaaaacaaaccagatagatat |
31998833 |
T |
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| Q |
216 |
taatttatcaaaatcttttatttatttctttttgttttaatcaagctgtgacaacacaaattatatcaacatttagttgtgtaatcaaagagaccagaga |
315 |
Q |
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| T |
31998832 |
taatttctcaaaatcttttattaatttctttttgttttaatcaagctgtgacaacacaaattatatcaacatttagttgtgtaatcaaagagaccagaga |
31998733 |
T |
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| Q |
316 |
atacaatttaccacaatttctagcaattcctacaaaactatgagcaactctattgttacatctcttaacataaattaaactaacattagacatactgaac |
415 |
Q |
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| T |
31998732 |
atacaatttaccacaatttctagcaattcctacaaaactatgagcaactctattgttacatcacttaacataaattaaactaacattagacatactgaac |
31998633 |
T |
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| Q |
416 |
aacaattcatgacagtcagacacgacaatatccttgtactccagcttagttttcccaagcacgcagttcacaaacatttggcatattttgtgtagacatc |
515 |
Q |
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| T |
31998632 |
aacaattcatgacagtcaaacacgacaatatccttgtactccagcttagttttcccaagcacgcagttcacaaacatttggcatattttgtgtagacatc |
31998533 |
T |
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| Q |
516 |
caccggagacaccaacgcagtcccataatgtccggcaaagctggagcctttgtcacatctccctc |
580 |
Q |
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| T |
31998532 |
caccggagacaccaacgcagtcccataatgtccggcaaaactggagcctttgtcacatctccctc |
31998468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 324 - 433
Target Start/End: Complemental strand, 42613200 - 42613096
Alignment:
| Q |
324 |
taccacaatttctagcaattcctacaaaactatgagcaactctattgttacatctcttaacataaattaaactaacattagacatactgaacaacaattc |
423 |
Q |
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| T |
42613200 |
taccacagtttctagcaattcctaccaacc-atgagcagctctactgttacatctctta----aacataaactaacattagacatactgaatatcaattc |
42613106 |
T |
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| Q |
424 |
atgacagtca |
433 |
Q |
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| T |
42613105 |
aagtcagtca |
42613096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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