View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14590_low_3 (Length: 351)
Name: NF14590_low_3
Description: NF14590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14590_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 36353652 - 36353977
Alignment:
| Q |
14 |
atactatgaaaaatattacatagagttcacacacactgacctccaacgtgaaccgat----gaagcaacgacacaagcataaatattagacacaatactg |
109 |
Q |
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| T |
36353652 |
atactatgaaaaatattacatagagttcacacacactgacctccaacgtcaaccgatcgatgaagcaacgacacaagcataaatattagacacaatactg |
36353751 |
T |
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| Q |
110 |
cactagctcctacac--taatatttctttaacaaaacgagtggttgaacgtaactatatatgtcagtatcatgtcggtatcagacatccaatctgaagtg |
207 |
Q |
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| T |
36353752 |
cactagctcctacacaataatatttctttaacaaaacaagtggttgaacgtaactatatatatcagtatcatgtcggtatcagacctccaatctgaagtg |
36353851 |
T |
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| Q |
208 |
tcgattctatatagatgccaactagttgagaattagatcttcatcttgtagcgaaaggaaaccaacgttcatgaaaagaagactgataagaaatcataga |
307 |
Q |
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| T |
36353852 |
tcgattctatatagataccaactagttgagaatgagatcttcatcttgtagcgaaaggaaaccaacgttcatgaaaagaagactgataagaaatcataaa |
36353951 |
T |
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| Q |
308 |
caagaggaacacaagcaagagtgcca |
333 |
Q |
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| T |
36353952 |
caagaggaacacaagcaagagtgcca |
36353977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 36355191 - 36355261
Alignment:
| Q |
261 |
aaaggaaaccaacgttcatgaaaagaagactgataagaaatcatagacaagaggaacacaagcaagagtgc |
331 |
Q |
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| T |
36355191 |
aaaggaaaccaacgttcatgaaaagaagactgatgagccatcatgaacaaaaggaacacaagcaacagtgc |
36355261 |
T |
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