View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14590_low_4 (Length: 351)
Name: NF14590_low_4
Description: NF14590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14590_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 143 - 348
Target Start/End: Original strand, 38971362 - 38971567
Alignment:
| Q |
143 |
actgcatatgtgtgtgtatatgagatttgtgtctaaatatattcttatgtttataacttagtagtaatttattctgaccttatttgttctcatatattga |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38971362 |
actgcatatgtgtgtgtatatgagatttgtgtctaaatatattcttatgtttataacttagtagtaatttattctgaccttatttgttctcatatattga |
38971461 |
T |
|
| Q |
243 |
tatggaactatataaaatcttattttggatttgcaatacactcaagttgtgtgtgactgtgtaaacaatctatcccttaatgatcccctatgcatggttc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38971462 |
tatggaactatataaaatcttattttggatttgcaatacactcaagttgtgtgtgactgtgtaaacaatctatcccttaatgatcccctatgcatggttc |
38971561 |
T |
|
| Q |
343 |
atctca |
348 |
Q |
| |
|
|||||| |
|
|
| T |
38971562 |
atctca |
38971567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 265 - 348
Target Start/End: Original strand, 41791400 - 41791483
Alignment:
| Q |
265 |
ttttggatttgcaatacactcaagttgtgtgtgactgtgtaaacaatctatcccttaatgatcccctatgcatggttcatctca |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41791400 |
ttttggatttgcaatacactcaagttgtgtgtgactgtgtaaacaatctatcccttaatgatcccctatgcatggttcatctca |
41791483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 38971220 - 38971331
Alignment:
| Q |
1 |
aaaagagtgttcatatgaattccatttccaattaatatatcgatgaaacagacaaacattatacaattgtaaagnnnnnnnnnnngtatcaaccaccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38971220 |
aaaagagtgttcatatgaattccatttccaattaatatatcgatgaaacagacaaacattatacaattgtaaagaaaaaaaaaaagtatcaaccaccatc |
38971319 |
T |
|
| Q |
101 |
atacgatattag |
112 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38971320 |
atacgatattag |
38971331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 172 - 342
Target Start/End: Complemental strand, 47762469 - 47762286
Alignment:
| Q |
172 |
tgtctaaatatattcttatgtttataacttagtagtaatttattctgac---cttatttgttctcatatattgatatggaact----------atataaa |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
47762469 |
tgtctaaatatattcttatgtttataacttagtagtagtttattctgactttcttatttgttctcatatattgatatggaaatggaactatatatataaa |
47762370 |
T |
|
| Q |
259 |
atcttattttggatttgcaatacactcaagttgtgtgtgactgtgtaaacaatctatcccttaatgatcccctatgcatggttc |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47762369 |
atcttattttggatttgcaatacactcaagttgtgtgtgacagtgttaacaatctatcccttaatgaccccctatgcatggttc |
47762286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University