View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14590_low_6 (Length: 232)

Name: NF14590_low_6
Description: NF14590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14590_low_6
NF14590_low_6
[»] chr6 (6 HSPs)
chr6 (87-146)||(12151758-12151817)
chr6 (88-123)||(3335382-3335417)
chr6 (110-147)||(9395225-9395262)
chr6 (110-147)||(10557555-10557592)
chr6 (110-147)||(22422296-22422333)
chr6 (110-147)||(32135325-32135362)
[»] chr1 (14 HSPs)
chr1 (87-147)||(35030662-35030722)
chr1 (90-146)||(48689669-48689725)
chr1 (110-147)||(29094636-29094673)
chr1 (110-147)||(50875578-50875615)
chr1 (87-123)||(40053017-40053053)
chr1 (88-124)||(43757698-43757734)
chr1 (110-147)||(12990373-12990410)
chr1 (110-143)||(37947112-37947145)
chr1 (110-143)||(48336347-48336380)
chr1 (87-123)||(31666130-31666166)
chr1 (88-124)||(37741875-37741911)
chr1 (87-123)||(46903581-46903617)
chr1 (88-124)||(48028638-48028674)
chr1 (88-124)||(51436354-51436390)
[»] chr4 (15 HSPs)
chr4 (87-146)||(48650157-48650216)
chr4 (90-147)||(14089934-14089991)
chr4 (88-144)||(53292262-53292318)
chr4 (110-147)||(9096082-9096119)
chr4 (110-147)||(36848340-36848377)
chr4 (110-147)||(45678409-45678446)
chr4 (87-123)||(1987637-1987673)
chr4 (87-146)||(44539405-44539464)
chr4 (87-122)||(54803255-54803290)
chr4 (110-147)||(22894014-22894051)
chr4 (110-147)||(22945682-22945719)
chr4 (87-123)||(30250222-30250258)
chr4 (110-146)||(39699356-39699392)
chr4 (87-123)||(46309047-46309083)
chr4 (110-146)||(48760431-48760467)
[»] chr8 (11 HSPs)
chr8 (87-147)||(30462638-30462698)
chr8 (110-144)||(1422593-1422627)
chr8 (110-147)||(18550125-18550162)
chr8 (110-148)||(7678878-7678915)
chr8 (110-144)||(42651066-42651100)
chr8 (110-147)||(21649058-21649095)
chr8 (110-147)||(37471789-37471826)
chr8 (110-147)||(41776321-41776358)
chr8 (115-147)||(3000728-3000760)
chr8 (87-123)||(5742581-5742617)
chr8 (87-123)||(28156314-28156350)
[»] chr7 (12 HSPs)
chr7 (110-147)||(11788376-11788413)
chr7 (99-147)||(47988587-47988635)
chr7 (87-139)||(27383822-27383874)
chr7 (110-143)||(37969935-37969968)
chr7 (110-147)||(47945129-47945166)
chr7 (110-147)||(47950559-47950596)
chr7 (87-123)||(640503-640539)
chr7 (87-123)||(2600458-2600494)
chr7 (87-123)||(11070339-11070375)
chr7 (87-123)||(37970044-37970080)
chr7 (88-124)||(47379672-47379708)
chr7 (87-147)||(48522267-48522327)
[»] chr2 (14 HSPs)
chr2 (110-147)||(35518421-35518458)
chr2 (110-147)||(8757690-8757727)
chr2 (87-117)||(37827715-37827745)
chr2 (110-147)||(1096231-1096268)
chr2 (110-147)||(11828708-11828745)
chr2 (87-124)||(13850107-13850144)
chr2 (110-147)||(26387719-26387756)
chr2 (110-147)||(28679273-28679310)
chr2 (110-147)||(35705805-35705842)
chr2 (110-147)||(45202020-45202057)
chr2 (87-123)||(1151640-1151676)
chr2 (87-123)||(4858224-4858260)
chr2 (87-123)||(34373119-34373155)
chr2 (87-123)||(38724241-38724277)
[»] chr5 (11 HSPs)
chr5 (110-147)||(17574112-17574149)
chr5 (87-123)||(8761758-8761794)
chr5 (87-117)||(9940165-9940195)
chr5 (87-124)||(5005224-5005261)
chr5 (114-147)||(9940204-9940237)
chr5 (110-147)||(25585344-25585381)
chr5 (110-147)||(37821029-37821066)
chr5 (87-123)||(3518294-3518330)
chr5 (87-123)||(10469871-10469907)
chr5 (110-146)||(12612906-12612942)
chr5 (112-144)||(43152951-43152983)
[»] chr3 (13 HSPs)
chr3 (110-147)||(9027759-9027796)
chr3 (110-147)||(43149231-43149268)
chr3 (114-147)||(11404842-11404875)
chr3 (87-124)||(16295575-16295612)
chr3 (114-147)||(27276884-27276917)
chr3 (87-124)||(29533872-29533909)
chr3 (110-147)||(29846779-29846816)
chr3 (110-147)||(32687848-32687884)
chr3 (114-147)||(33972033-33972066)
chr3 (110-147)||(44827099-44827136)
chr3 (110-147)||(48117482-48117519)
chr3 (87-123)||(2280288-2280324)
chr3 (87-123)||(50025609-50025645)
[»] scaffold0592 (1 HSPs)
scaffold0592 (87-124)||(1021-1058)
[»] scaffold0036 (1 HSPs)
scaffold0036 (87-123)||(54586-54622)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 12151817 - 12151758
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaaatagttgttcaaatatcattact 146  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12151817 gaccaataagaagagagaacaacaaagttgtaccaaaatagttgttcaaatatcattact 12151758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 3335417 - 3335382
Alignment:
Q  88 accaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    |||||||||||||||||||||||||||||| |||||    
T  3335417 accaatgaaaagagagaacaacaaagttgtctcaaa 3335382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 9395262 - 9395225
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  9395262 aaagttgtagcaaaaaagttgttcaaatatcattactc 9395225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 10557555 - 10557592
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  10557555 aaagttgtagcaaaaaagttgttcaaatatcattactc 10557592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 22422296 - 22422333
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  22422296 aaagttgtaccaaaataattgttcaaatatcattactc 22422333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 32135362 - 32135325
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  32135362 aaagttgtagcaaaaaagttgttcaaatatcattactc 32135325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 35030722 - 35030662
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||| |||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  35030722 gaccaataaaaaaagagaacaacaaggttgtaccaaaatagttgttcaaatatcattactc 35030662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 48689669 - 48689725
Alignment:
Q  90 caatgaaaagagagaacaacaaagttgtatcaaaatagttgttcaaatatcattact 146  Q
    |||||||||||||||||||||| |||||  ||||| |||||||||||||||| ||||    
T  48689669 caatgaaaagagagaacaacaaggttgtcccaaaagagttgttcaaatatcactact 48689725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 29094673 - 29094636
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  29094673 aaagttgtatcaaaagagttgttcaaatatcattactc 29094636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 50875578 - 50875615
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    |||||||||| |||||||||||||||||||||||||||    
T  50875578 aaagttgtattaaaatagttgttcaaatatcattactc 50875615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 40053017 - 40053053
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||||||||||||||||||||||||| |||||    
T  40053017 gaccaatgaaaagagagaacaacaaagttgtctcaaa 40053053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 43757698 - 43757734
Alignment:
Q  88 accaatgaaaagagagaacaacaaagttgtatcaaaa 124  Q
    |||||||||||||||||||||||||||||| ||||||    
T  43757698 accaatgaaaagagagaacaacaaagttgtctcaaaa 43757734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 12990410 - 12990373
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  12990410 aaagttgtatcaaaagagttgttcaaatatcactactc 12990373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 37947145 - 37947112
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcatt 143  Q
    ||||||||| ||||||||||||||||||||||||    
T  37947145 aaagttgtaacaaaatagttgttcaaatatcatt 37947112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 48336380 - 48336347
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcatt 143  Q
    ||||||||| ||||||||||||||||||||||||    
T  48336380 aaagttgtaacaaaatagttgttcaaatatcatt 48336347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 31666166 - 31666130
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  31666166 gaccaatgagaagagagaacaacaaagttgtctcaaa 31666130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 37741911 - 37741875
Alignment:
Q  88 accaatgaaaagagagaacaacaaagttgtatcaaaa 124  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  37741911 accaatgagaagagagaacaacaaagttgtctcaaaa 37741875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 46903581 - 46903617
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  46903581 gaccaatgagaagagagaacaacaaagttgtctcaaa 46903617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 48028638 - 48028674
Alignment:
Q  88 accaatgaaaagagagaacaacaaagttgtatcaaaa 124  Q
    |||||||| |||||||||||||||||||||| |||||    
T  48028638 accaatgagaagagagaacaacaaagttgtaccaaaa 48028674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 51436390 - 51436354
Alignment:
Q  88 accaatgaaaagagagaacaacaaagttgtatcaaaa 124  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  51436390 accaatgagaagagagaacaacaaagttgtctcaaaa 51436354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 48650216 - 48650157
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaaatagttgttcaaatatcattact 146  Q
    ||||||| | ||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  48650216 gaccaataagaagagagaacaacaaggttgtaccaaaatagttgttcaaatatcattact 48650157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 14089991 - 14089934
Alignment:
Q  90 caatgaaaagagagaacaacaaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    |||| |||||| |||||||||| |||||  ||||||||||||||||||||||||||||    
T  14089991 caataaaaagaaagaacaacaaggttgtcccaaaatagttgttcaaatatcattactc 14089934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 53292262 - 53292318
Alignment:
Q  88 accaatgaaaagagagaacaacaaagttgtatcaaaatagttgttcaaatatcatta 144  Q
    |||||| |||||| |||||||||| |||||| |||||||||||||||||||| ||||    
T  53292262 accaataaaaagatagaacaacaaggttgtagcaaaatagttgttcaaatattatta 53292318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 9096082 - 9096119
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  9096082 aaagttgtatcaaaataattgttcaaatatcattactc 9096119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 36848377 - 36848340
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  36848377 aaagttgtatcaaaagagttgttcaaatatcattactc 36848340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 45678409 - 45678446
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  45678409 aaagttgtaccaaaatagttgttcaaatatcattactc 45678446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 1987673 - 1987637
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||||||||||||||||||||||||| |||||    
T  1987673 gaccaatgaaaagagagaacaacaaagttgtctcaaa 1987637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 44539405 - 44539464
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaaatagttgttcaaatatcattact 146  Q
    ||||||| ||||||||| |||| ||| |||||  |||| |||||||||||||||||||||    
T  44539405 gaccaataaaaagagagcacaataaaattgtaggaaaaaagttgttcaaatatcattact 44539464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 54803290 - 54803255
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaa 122  Q
    ||||||||||||||||||||||||||||||| ||||    
T  54803290 gaccaatgaaaagagagaacaacaaagttgtctcaa 54803255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 22894014 - 22894051
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  22894014 aaagttgtagcaaaaaagttgttcaaatatcattactc 22894051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 22945682 - 22945719
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  22945682 aaagttgtagcaaaaaagttgttcaaatatcattactc 22945719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 30250258 - 30250222
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  30250258 gaccaataaaaagagagaacaacaaagttgtctcaaa 30250222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 39699392 - 39699356
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattact 146  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  39699392 aaagttgtatcaaaagagttgttcaaatatcactact 39699356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 46309083 - 46309047
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    |||||||||||||||||||| |||||||||| |||||    
T  46309083 gaccaatgaaaagagagaactacaaagttgtctcaaa 46309047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 48760431 - 48760467
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattact 146  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  48760431 aaagttgtagcaaaaaagttgttcaaatatcattact 48760467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 30462698 - 30462638
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||| |||||||| ||||| || |||||| ||||||||||||||||||||||||||||    
T  30462698 gaccaataaaaagagataacaataaggttgtaccaaaatagttgttcaaatatcattactc 30462638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 1422627 - 1422593
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcatta 144  Q
    |||||||||||||||||||||||||||||||||||    
T  1422627 aaagttgtatcaaaatagttgttcaaatatcatta 1422593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 18550125 - 18550162
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  18550125 aaagttgtaccaaaatagttgttcaaatatcattactc 18550162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 7678878 - 7678915
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactcc 148  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  7678878 aaagttgtatcaaa-tagttgttcaaatatcattactcc 7678915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 42651066 - 42651100
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcatta 144  Q
    ||||||||| |||||||||||||||||||||||||    
T  42651066 aaagttgtaccaaaatagttgttcaaatatcatta 42651100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 21649095 - 21649058
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  21649095 aaagttgtagcaaaaaagttgttcaaatatcattactc 21649058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 37471789 - 37471826
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  37471789 aaagttgtagcaaaaaagttgttcaaatatcattactc 37471826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 41776321 - 41776358
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  41776321 aaagttgtagcaaaaaagttgttcaaatatcattactc 41776358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 3000728 - 3000760
Alignment:
Q  115 tgtatcaaaatagttgttcaaatatcattactc 147  Q
    |||| ||||||||||||||||||||||||||||    
T  3000728 tgtaccaaaatagttgttcaaatatcattactc 3000760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 5742617 - 5742581
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  5742617 gaccaatgagaagagagaacaacaaagttgtctcaaa 5742581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 28156314 - 28156350
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  28156314 gaccaatgagaagagagaacaacaaagttgtctcaaa 28156350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 11788413 - 11788376
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11788413 aaagttgtatcaaaatagttgttcaaatatcattactc 11788376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 47988587 - 47988635
Alignment:
Q  99 gagagaacaacaaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||||    
T  47988587 gagagaacaacaaagttgtaccaaaataatcgttcaaatatcattactc 47988635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 27383874 - 27383822
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaaatagttgttcaaatat 139  Q
    ||||||| | |||||||||||||||||||||| |||||| |||||| ||||||    
T  27383874 gaccaattagaagagagaacaacaaagttgtaccaaaatggttgttaaaatat 27383822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 37969968 - 37969935
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcatt 143  Q
    |||||||||||||||||||||| |||||||||||    
T  37969968 aaagttgtatcaaaatagttgtacaaatatcatt 37969935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 47945129 - 47945166
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  47945129 aaagttgtatcaaaagagttgttcaaatatcactactc 47945166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 47950559 - 47950596
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  47950559 aaagttgtatcaaaagagttgttcaaatatcactactc 47950596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 640503 - 640539
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  640503 gaccaatgagaagagagaacaacaaagttgtctcaaa 640539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 2600494 - 2600458
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  2600494 gaccaatgagaagagagaacaacaaagttgtctcaaa 2600458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 11070339 - 11070375
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  11070339 gaccaatgaaaagagagaagaacaaagttgtctcaaa 11070375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 37970044 - 37970080
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  37970044 gaccaatgagaagagagaacaacaaagttgtctcaaa 37970080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 47379672 - 47379708
Alignment:
Q  88 accaatgaaaagagagaacaacaaagttgtatcaaaa 124  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  47379672 accaatgagaagagagaacaacaaagttgtctcaaaa 47379708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 48522267 - 48522327
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||| | |||| ||||||||||||||||    |||| |||||||||||||||||||||    
T  48522267 gaccaataacaagaaagaacaacaaagttgtcatgaaatggttgttcaaatatcattactc 48522327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 35518421 - 35518458
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35518421 aaagttgtatcaaaatagttgttcaaatatcattactc 35518458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 8757690 - 8757727
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  8757690 aaagttgtaccaaaatagttgttcaaatatcattactc 8757727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 117
Target Start/End: Complemental strand, 37827745 - 37827715
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgt 117  Q
    |||||||||||||||||||||||||||||||    
T  37827745 gaccaatgaaaagagagaacaacaaagttgt 37827715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 1096268 - 1096231
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  1096268 aaagttgtatcaaaagagttgttcaaatatcactactc 1096231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 11828745 - 11828708
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  11828745 aaagttgtagcaaaaaagttgttcaaatatcattactc 11828708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 13850144 - 13850107
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaaa 124  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  13850144 gaccaatgaaaagagagaacaacaaaattgtctcaaaa 13850107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 26387756 - 26387719
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  26387756 aaagttgtatcaaaagagttgttcaaatatcactactc 26387719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 28679273 - 28679310
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  28679273 aaagttgtaccaaaagagttgttcaaatatcattactc 28679310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 35705842 - 35705805
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  35705842 aaagttgtagcaaaaaagttgttcaaatatcattactc 35705805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 45202057 - 45202020
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  45202057 aaagttgtagcaaaaaagttgttcaaatatcattactc 45202020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 1151640 - 1151676
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    |||||||||||| |||||||||||||||||| |||||    
T  1151640 gaccaatgaaaaaagagaacaacaaagttgtctcaaa 1151676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 4858224 - 4858260
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    |||||||||||||||||||||||||| |||| |||||    
T  4858224 gaccaatgaaaagagagaacaacaaaattgtctcaaa 4858260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 34373119 - 34373155
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  34373119 gaccaatgagaagagagaacaacaaagttgtctcaaa 34373155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 38724277 - 38724241
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    |||||||||| |||||||||||||||||||| |||||    
T  38724277 gaccaatgaatagagagaacaacaaagttgtctcaaa 38724241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 17574149 - 17574112
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  17574149 aaagttgtaccaaaatagttgttcaaatatcattactc 17574112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 8761758 - 8761794
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||||||||||||||||||||||||| |||||    
T  8761758 gaccaatgaaaagagagaacaacaaagttgtctcaaa 8761794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 117
Target Start/End: Original strand, 9940165 - 9940195
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgt 117  Q
    |||||||||||||||||||||||||||||||    
T  9940165 gaccaatgaaaagagagaacaacaaagttgt 9940195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 5005224 - 5005261
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaaa 124  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  5005224 gaccaatgataagagagaacaacaaagttgtctcaaaa 5005261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 9940204 - 9940237
Alignment:
Q  114 ttgtatcaaaatagttgttcaaatatcattactc 147  Q
    |||||||||||||||| |||||||||||||||||    
T  9940204 ttgtatcaaaatagttattcaaatatcattactc 9940237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 25585381 - 25585344
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  25585381 aaagttgtaacaaaatagttgttcaaatattattactc 25585344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 37821066 - 37821029
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  37821066 aaagttgtaccaaaatagttgttcaaatatcactactc 37821029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 3518294 - 3518330
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  3518294 gaccaatgagaagagagaacaacaaagttgtctcaaa 3518330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 10469907 - 10469871
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  10469907 gaccaatgagaagagagaacaacaaagttgtctcaaa 10469871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 12612942 - 12612906
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattact 146  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  12612942 aaagttgtaccaaaatggttgttcaaatatcattact 12612906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 43152983 - 43152951
Alignment:
Q  112 agttgtatcaaaatagttgttcaaatatcatta 144  Q
    ||||||| |||||||||||||||||||||||||    
T  43152983 agttgtaccaaaatagttgttcaaatatcatta 43152951  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 9027759 - 9027796
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  9027759 aaagttgtaccaaaatagttgttcaaatatcattactc 9027796  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 43149268 - 43149231
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  43149268 aaagttgtaccaaaatagttgttcaaatatcattactc 43149231  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 11404875 - 11404842
Alignment:
Q  114 ttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||| ||||||||||||||||||||||||||||    
T  11404875 ttgtaccaaaatagttgttcaaatatcattactc 11404842  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 16295575 - 16295612
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaaa 124  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  16295575 gaccaataaaaagagagaacaacaaagttgtctcaaaa 16295612  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 27276884 - 27276917
Alignment:
Q  114 ttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||| ||||||||||||||||||||||||||||    
T  27276884 ttgtaccaaaatagttgttcaaatatcattactc 27276917  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 29533872 - 29533909
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaaa 124  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  29533872 gaccaatgagaagagagaacaacaaagttgtctcaaaa 29533909  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 29846816 - 29846779
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  29846816 aaagttgtagcaaaaaagttgttcaaatatcattactc 29846779  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 32687884 - 32687848
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    |||||||||||||| |||||||||||||||||||||||    
T  32687884 aaagttgtatcaaa-tagttgttcaaatatcattactc 32687848  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 33972033 - 33972066
Alignment:
Q  114 ttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||| ||||||||||||||||||||||||||||    
T  33972033 ttgtaccaaaatagttgttcaaatatcattactc 33972066  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 44827099 - 44827136
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  44827099 aaagttgtagcaaaaaagttgttcaaatatcattactc 44827136  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 48117482 - 48117519
Alignment:
Q  110 aaagttgtatcaaaatagttgttcaaatatcattactc 147  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  48117482 aaagttgtagcaaaaaagttgttcaaatatcattactc 48117519  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 2280288 - 2280324
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  2280288 gaccaatgagaagagagaacaacaaagttgtctcaaa 2280324  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 50025645 - 50025609
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  50025645 gaccaatgagaagagagaacaacaaagttgtctcaaa 50025609  T

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Target: scaffold0592 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 1021 - 1058
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaaa 124  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  1021 gaccaatgaaaagagagaacaacaaagttatctcaaaa 1058  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 54622 - 54586
Alignment:
Q  87 gaccaatgaaaagagagaacaacaaagttgtatcaaa 123  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  54622 gaccaataaaaagagagaacaacaaagttgtctcaaa 54586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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