View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14591_high_2 (Length: 476)
Name: NF14591_high_2
Description: NF14591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14591_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 12 - 458
Target Start/End: Complemental strand, 44068415 - 44067969
Alignment:
| Q |
12 |
cgaagaaaatggctagtatgagtagaaatggcaagtaaactaggccattggcaatagcataagatgaaactctgtagcttccacttgaagtctccttcat |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44068415 |
cgaataaaatggctagtatgagtagaaatggcaagtaaactaggccattggcaatagcataagatgaaactctgtagcttccacttgaagtctccttcat |
44068316 |
T |
|
| Q |
112 |
tagaatctccctttcttgtagaaaaatcggtagagcttcaatggcactcgataacaaaaacgttaaaatgaaagcaaatagaccaaccctttgttctgct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44068315 |
tagaatctccctttcttgtagaaaaatcggtagagcttcaatggcactcgataacaaaaacgttaaaatgaaagcaaatagaccaaccctttgttctgct |
44068216 |
T |
|
| Q |
212 |
cccactagaccatctttgagattaccaaagatggatcctaaaaccagccctgaaatcagcatctgaatagtcctaaatgcaaagagctcctttgtacgga |
311 |
Q |
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| T |
44068215 |
cccacgagaccatctttgagattaccaaagatggatcctaaaaccagccctgaaatcagcatctgaatagtcctaaatgcaaagagctcctttgtacgga |
44068116 |
T |
|
| Q |
312 |
aaatattttttgagaacctatgagctagaatcatagtttctctcaatctagaattcgcataatcactagtgaaatccattcctacattcatgttttctat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44068115 |
aaatattttttgagaacctatgagctagaatcatagtttctctcaatctagaattcgcataatcactagtgaaatccattcctacattcatgttttctat |
44068016 |
T |
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| Q |
412 |
gtcaaataccttggattgttgaaatagctgttgcagagtaaacttac |
458 |
Q |
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| T |
44068015 |
gtcaaataccttggattgttgaaatagctgttgcagagtaaacttac |
44067969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 39264692 - 39264333
Alignment:
| Q |
17 |
aaaatggctagtatgagtagaaatggcaagtaaactaggccattggcaatagcataagatgaaactctgtagcttccacttgaagtctccttcattagaa |
116 |
Q |
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||||||||||| || || ||||||||||||||||||| |||||| ||||||||||||||||| || | ||||||||||| || || |||||||| |||| |
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| T |
39264692 |
aaaatggctaggattagaagaaatggcaagtaaactaagccatttgcaatagcataagatgatacgcggtagcttccacaagatgtttccttcatgagaa |
39264593 |
T |
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| Q |
117 |
tctccctttcttgtagaaaaatcggtagagcttcaatggcactcgataacaaaaacgttaaaatgaaagcaaatagaccaaccctttgttctgctcccac |
216 |
Q |
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| T |
39264592 |
tttccctttcttgtagaaaaattggtagagcttctatgctgcttgataacagaaaagttaatatgaaagcaaatagaccaaccctttcttgtgttcctct |
39264493 |
T |
|
| Q |
217 |
tagaccatctttgagattaccaaagatggatcctaaaaccagccctgaaatcagcatctgaatagtcctaaatgcaaagagctcctttgtacggaaaata |
316 |
Q |
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|||| |||||||||| |||| |||||||||||||||||| || |||||||||||||||||||| ||||| ||||||| ||||| |||||||| || || |
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| T |
39264492 |
tagatcatctttgaggttacaaaagatggatcctaaaactagtcctgaaatcagcatctgaattgtcctgcatgcaaatagctcttttgtacgaaatatg |
39264393 |
T |
|
| Q |
317 |
ttttttgagaacctatgagctagaatcatagtttctctcaatctagaattcgcataatca |
376 |
Q |
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||||| ||||| ||||||| |||||||||||||||||||||||| ||||| ||| ||||| |
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| T |
39264392 |
tttttggagaatctatgagttagaatcatagtttctctcaatctggaattagcaaaatca |
39264333 |
T |
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